Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m03
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    57   2e-09
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    26   3.9  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    26   3.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
 Frame = +3

Query: 333 WVIERVVSAALVP--LIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPI 506
           W  ER+++ A+VP  +IPL     + L D+ LA  +  H+  G E+  +DY  A  F  +
Sbjct: 88  WDFERIIAIAMVPQVMIPLFTGTSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKKL 147

Query: 507 LPKIAIGLVYLISIATLGGLFYIISHDVGIANGIRQFW 620
            P +   ++   ++ TL G++   ++D+G+  GI++ W
Sbjct: 148 SP-LMHWILRGCTVLTLIGVYEFNTNDIGLTEGIKKLW 184


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 ILNAIRSFRTSCVRRSAEKVEDHSRL 332
           +LNA  S RT+C RR  + +E H+ +
Sbjct: 5   VLNAQVSIRTACCRRWIDCIECHNEI 30


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 80  YHTINNHGVLHVSSYIRMPKSNVHPTSYEASDPAS 184
           Y+T+ N GV ++  Y+ +P   V  T      PA+
Sbjct: 65  YYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAA 99


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 39  TLKPNRTKSPN 7
           T+KPN+TKSPN
Sbjct: 610 TIKPNQTKSPN 620


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 214  NELEIIRCVIAGWVASLIACWVNIRLW 134
            N+L  I+ V+ GW   L   W +I +W
Sbjct: 2738 NKLRDIKVVLQGWRERLPNVWDDIDIW 2764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,466
Number of Sequences: 5004
Number of extensions: 58477
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)