Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m03
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    30   1.3  
11_01_0098 - 724413-724449,725200-725690                               29   3.0  
07_03_0237 - 15606012-15606312,15606593-15606606,15606979-156074...    29   4.0  
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     28   5.3  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   5.3  

>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 336 VIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPK 515
           VI   + AALVP++    +M ++ F S L  +I       L  +A+ Y    +  P L K
Sbjct: 250 VILGTLLAALVPVVGFNAVMTSEHFASFLVFII-------LHVVALVYYIKGLLTPRLFK 302

Query: 516 IAIGLVYLISIATLGGLFYII 578
           +A+ LV  + +A    +  I+
Sbjct: 303 VAMTLVITVGLAVCFAVIAIL 323


>11_01_0098 - 724413-724449,725200-725690
          Length = 175

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 527 LGVSHLHCNTGRLVLHNQPR--CRHRQRHQTVLG 622
           LG  HLH N  +L L    R  CRHR+R   V+G
Sbjct: 59  LGAVHLHRNPPQLRLLQPGRGSCRHRRRRVAVVG 92


>07_03_0237 -
           15606012-15606312,15606593-15606606,15606979-15607469,
           15608444-15608483
          Length = 281

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 23  LLGFKVIFIFYYYKKVLVIYHTINNHGVLHVSSYIRMPKSNVHPTSY 163
           L G+  I  F+ YK+V+ + HT+      H+++       N+ P  Y
Sbjct: 208 LTGYVTILGFHPYKEVVFLSHTLTRGLAYHLNTRKVQDMGNIRPKYY 254


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 494 IWSYFTQNCH-RLGVSHLHCNTGRLVLHNQPRCRHRQRH 607
           IW   T  C  +L   H HCN     LH+   C  R+R+
Sbjct: 766 IWHIATSLCEIKLAQEHDHCNGSPGFLHSALSCYRRRRN 804


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 371 WDQCSRNHSLNDPEPGVVLDLLR*PAHARR 282
           W + S NH   D   G+VL LL  P+HAR+
Sbjct: 338 WIEQSENHRKGD-HAGIVLVLLNHPSHARQ 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,923
Number of Sequences: 37544
Number of extensions: 390908
Number of successful extensions: 988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)