Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m03
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical pr...    75   4e-14
Z78015-2|CAB01431.1|   97|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    28   4.8  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   6.3  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   6.3  
U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    27   8.3  

>Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical
           protein F33A8.5 protein.
          Length = 145

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 35/115 (30%), Positives = 61/115 (53%)
 Frame = +3

Query: 282 TSCVRRSAEKVEDHSRLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLE 461
           TS +   A KV DHS  + +ER+ +  ++P++P +  +   + D++L + +T H  WG+ 
Sbjct: 31  TSTLNDGASKVPDHSMHFKLERLWAVGMLPILPASYFIHGPVMDAVLTVALTLHIHWGIH 90

Query: 462 AIAVDYVRASIFGPILPKIAIGLVYLISIATLGGLFYIISHDVGIANGIRQFWAI 626
            +  DY R  + G    K A   VYLI+   LG L +  ++DVGI       +++
Sbjct: 91  GVVYDYARPYVIGEAAAKAAHVGVYLITGLLLGALLHFNTNDVGITKAFELVFSL 145


>Z78015-2|CAB01431.1|   97|Caenorhabditis elegans Hypothetical
           protein R02D5.4 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 150 TQQAMRLATQPAITQRMISSSLPVRNIMKDTKTTPILNAIRSFRTSCVRRSAEKVEDHSR 329
           T  +M L T  A T R+  +       M+ ++ TPIL   RS   SC++   E  E+  R
Sbjct: 40  THNSMELPTSSATTARIEGAR------MESSRQTPILLLNRSMSDSCLKLQIEDEEEEGR 93


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = +3

Query: 348 VVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPKIAIG 527
           +VSA +   I   +     + DS L  ++       + AI++ Y+ + IFG +   +A+ 
Sbjct: 380 IVSAVIFTSILYWMSGLVPIIDSFLIYMLVGILVQNI-AISIGYMFSCIFGTVNLAVAVM 438

Query: 528 LVYLISIATLGGLF 569
            ++++ +   GG F
Sbjct: 439 PIFVVPMMAFGGFF 452


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = +3

Query: 348 VVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPKIAIG 527
           +VSA +   I   +     + DS L  ++       + AI++ Y+ + IFG +   +A+ 
Sbjct: 517 IVSAVIFTSILYWMSGLVPIIDSFLIYMLVGILVQNI-AISIGYMFSCIFGTVNLAVAVM 575

Query: 528 LVYLISIATLGGLF 569
            ++++ +   GG F
Sbjct: 576 PIFVVPMMAFGGFF 589


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 229  IFLTGNELEIIRCVIAGWVASLIACWVNI 143
            IF+TG +   +   I GW+ + I  W+++
Sbjct: 4671 IFITGMQFPYVEYEITGWMLAQILYWISV 4699


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 229  IFLTGNELEIIRCVIAGWVASLIACWVNI 143
            IF+TG +   +   I GW+ + I  W+++
Sbjct: 4663 IFITGMQFPYVEYEITGWMLAQILYWISV 4691


>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 208 LEIIRCVIAGWVASLIAC 155
           L  + CV++G+VASL+AC
Sbjct: 95  LTCLHCVLSGFVASLLAC 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,520
Number of Sequences: 27780
Number of extensions: 329834
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)