Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m02
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   1.6  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    26   2.8  
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    26   3.7  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   4.9  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   6.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    25   8.5  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   8.5  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   8.5  

>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 148 FLCFCDVLDIFVKNFVYCTYRKKQILYLSIFTKFISF 38
           ++ FC VL++  KN V    R   +LY  IF+ F+SF
Sbjct: 601 YVVFCGVLELQSKNIVAGGVR---MLYAVIFSLFLSF 634


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +3

Query: 255 VLGQFLVLKKDKELFQEW 308
           V+G+FLVL+++K++ Q W
Sbjct: 256 VVGKFLVLEENKKIVQTW 273


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 309 MKDACSANSKQSADCYQCLKDWCDEFL*FLS 401
           MK A   N+K S +   C++D   EF+ F++
Sbjct: 21  MKSALPENAKISKEAKDCVQDCVSEFISFVT 51


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 74  NLFLSISTINKVFYENVEYITK 139
           +L LSI+ I  +FYE  EY  K
Sbjct: 421 SLHLSITKIKSLFYERKEYTAK 442


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 202 PTPANSVTGFSPIGSAT-KFLCFCDVLDIFVKNFVYCTYRK 83
           P P N     SP GSAT +  C   V D F    V   Y+K
Sbjct: 223 PLPENKDNKSSPFGSATVQTPCLHSVPDAFTNPDVATLYQK 263


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 124 DIFVKNFVYCTYRKKQILYLSIFTKFI 44
           D F++NF Y  YR  ++++  +  +F+
Sbjct: 251 DPFIENFRYVNYRYMKLIFHPLLDRFL 277


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -1

Query: 286 SFFSTKN*PKTT*ALSKPPVSSRFPKTSPTPANSVTGFSPI 164
           S FS  N P        P VSS F   +PT   S T FS I
Sbjct: 468 SIFSF-NAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSII 507


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 133 DVLDIFVKNFVYCTYRKKQILYLSIFTK 50
           D+LD+F++ FV C   +     LSI  K
Sbjct: 88  DLLDVFIRRFVLCASCQNPETELSINKK 115


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 235 PPVSSRFPKTSPTPANSVTGFSPIGS 158
           PP  SR    SPT + S +G +P+ S
Sbjct: 456 PPPLSRSASISPTLSGSGSGLTPLSS 481


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 76  FVSFYKYNKQSFLRKCRVHHKNIETLLLSQWVRNQ 180
           F+S Y  N    + + R+    ++  +LSQW+R +
Sbjct: 13  FLSNYSPNDSMSIFRQRLEQVRLDNDMLSQWIRER 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,674
Number of Sequences: 5004
Number of extensions: 40947
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)