Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m02
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0552 + 22040547-22040579,22040655-22040855,22040939-220411...    30   0.92 
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   6.5  
10_01_0358 - 3941313-3941328,3942374-3942693,3942774-3942912,394...    27   8.6  
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087...    27   8.6  

>06_03_0552 +
           22040547-22040579,22040655-22040855,22040939-22041115,
           22041791-22041984,22042277-22042539,22042964-22043073
          Length = 325

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 165 MGEKPVTELAGVGEVLGKRLETGGFDKAYV--VLGQFLVLKKDKELFQEWMKDACSANSK 338
           MG+K       VG++L   L+    DK     +  +  VLKK+  +F E+   A S    
Sbjct: 1   MGDKAEWGDGFVGKILFPSLQKKSGDKRTKKQLKNKLDVLKKEYSMFMEFKNCATSLGWD 60

Query: 339 QSADCYQCLKDWCDEFL 389
           ++     C  +W DE L
Sbjct: 61  EAKQTIVCSAEWWDEHL 77


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = +3

Query: 270 LVLKKDKELFQEWMKDA 320
           L+LK+ K++F++WM++A
Sbjct: 397 LILKEGKDIFEDWMEEA 413


>10_01_0358 -
           3941313-3941328,3942374-3942693,3942774-3942912,
           3943441-3943543,3944745-3944890,3944941-3945314,
           3946416-3946512,3947118-3947566
          Length = 547

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 262 PKTT*ALSKPPVSSRFPKTSPTPANSVTGFSPIGSATKFLC 140
           P+++ A S  PV+ +  KT+  PA       P G ++ F C
Sbjct: 6   PRSSSASSTSPVAGKKEKTATKPAGGGARDPPKGRSSSFAC 46


>02_05_0999 +
           33405982-33408279,33408356-33408466,33408551-33408703,
           33408870-33409033,33409113-33409210,33409296-33409474,
           33409588-33409675,33410285-33410451
          Length = 1085

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 333 SLHCRRPSSILEITLYLSLVPKIDPRRHRPYRSPRFQVVFLKLH 202
           SLH     S L  T ++ +VP++DP++ +P     ++ V  K+H
Sbjct: 659 SLHAMNDPSAL--THHIGVVPEVDPKQRKPV---EYETVTSKVH 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,910
Number of Sequences: 37544
Number of extensions: 223962
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)