Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28m02
(505 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542140-1|CAG46937.1| 89|Homo sapiens BANF1 protein. 157 3e-38
BC107702-1|AAI07703.1| 89|Homo sapiens BANF1 protein protein. 157 3e-38
BC005942-1|AAH05942.1| 89|Homo sapiens barrier to autointegrat... 157 3e-38
AF070447-1|AAC23575.1| 89|Homo sapiens barrier-to-autointegrat... 157 3e-38
AF068235-1|AAD15901.1| 89|Homo sapiens barrier-to-autointegrat... 157 3e-38
AF044773-1|AAC08964.1| 138|Homo sapiens breakpoint cluster regi... 153 3e-37
AL160071-2|CAC15540.1| 90|Homo sapiens chromosome 20 open read... 75 2e-13
BC062735-1|AAH62735.1| 90|Homo sapiens chromosome 20 open read... 74 2e-13
BC054871-1|AAH54871.1| 90|Homo sapiens chromosome 20 open read... 74 2e-13
AL160071-1|CAM28312.1| 42|Homo sapiens chromosome 20 open read... 32 0.99
AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII colla... 32 0.99
BC112124-1|AAI12125.1| 264|Homo sapiens N-acylsphingosine amido... 31 3.0
BC112122-1|AAI12123.1| 264|Homo sapiens N-acylsphingosine amido... 31 3.0
AF347024-1|AAL83822.1| 264|Homo sapiens alkaline ceramidase pro... 31 3.0
>CR542140-1|CAG46937.1| 89|Homo sapiens BANF1 protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +3
Query: 126 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 305
+TSQKHR+FVAEPMGEKPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKKD++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 306 WMKDACSANSKQSADCYQCLKDWCDEFL 389
W+KD C AN+KQS DC+ CL++WCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>BC107702-1|AAI07703.1| 89|Homo sapiens BANF1 protein protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +3
Query: 126 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 305
+TSQKHR+FVAEPMGEKPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKKD++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 306 WMKDACSANSKQSADCYQCLKDWCDEFL 389
W+KD C AN+KQS DC+ CL++WCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>BC005942-1|AAH05942.1| 89|Homo sapiens barrier to autointegration
factor 1 protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +3
Query: 126 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 305
+TSQKHR+FVAEPMGEKPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKKD++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 306 WMKDACSANSKQSADCYQCLKDWCDEFL 389
W+KD C AN+KQS DC+ CL++WCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>AF070447-1|AAC23575.1| 89|Homo sapiens barrier-to-autointegration
factor protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +3
Query: 126 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 305
+TSQKHR+FVAEPMGEKPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKKD++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 306 WMKDACSANSKQSADCYQCLKDWCDEFL 389
W+KD C AN+KQS DC+ CL++WCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>AF068235-1|AAD15901.1| 89|Homo sapiens barrier-to-autointegration
factor protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +3
Query: 126 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 305
+TSQKHR+FVAEPMGEKPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKKD++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 306 WMKDACSANSKQSADCYQCLKDWCDEFL 389
W+KD C AN+KQS DC+ CL++WCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>AF044773-1|AAC08964.1| 138|Homo sapiens breakpoint cluster region
protein 1 protein.
Length = 138
Score = 153 bits (371), Expect = 3e-37
Identities = 65/85 (76%), Positives = 77/85 (90%)
Frame = +3
Query: 126 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 305
+TSQKHR+FVAEPMGEKPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKKD++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 306 WMKDACSANSKQSADCYQCLKDWCD 380
W+KD C AN+KQS DC+ CL++WCD
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCD 86
>AL160071-2|CAC15540.1| 90|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 90
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/90 (38%), Positives = 53/90 (58%)
Frame = +3
Query: 120 MSSTSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELF 299
M + S + R F++EP+GEK V + G+ L L T G +KAY++LGQFL++ K++ F
Sbjct: 1 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 60
Query: 300 QEWMKDACSANSKQSADCYQCLKDWCDEFL 389
Q W+ A ++ CLK+WC FL
Sbjct: 61 QRWLICCFGATECEAQQTSHCLKEWCACFL 90
>BC062735-1|AAH62735.1| 90|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 90
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/90 (38%), Positives = 52/90 (57%)
Frame = +3
Query: 120 MSSTSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELF 299
M S + R F++EP+GEK V + G+ L L T G +KAY++LGQFL++ K++ F
Sbjct: 1 MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 60
Query: 300 QEWMKDACSANSKQSADCYQCLKDWCDEFL 389
Q W+ A ++ CLK+WC FL
Sbjct: 61 QRWLICCFGATECEAQQTSHCLKEWCACFL 90
>BC054871-1|AAH54871.1| 90|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 90
Score = 74.1 bits (174), Expect = 2e-13
Identities = 35/90 (38%), Positives = 52/90 (57%)
Frame = +3
Query: 120 MSSTSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELF 299
M S + R F++EP+GEK V + G+ L L T G +KAY++LGQFL++ K++ F
Sbjct: 1 MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 60
Query: 300 QEWMKDACSANSKQSADCYQCLKDWCDEFL 389
Q W+ A ++ CLK+WC FL
Sbjct: 61 QRWLICCFGATECEAQQTSHCLKEWCACFL 90
>AL160071-1|CAM28312.1| 42|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 42
Score = 32.3 bits (70), Expect = 0.99
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 120 MSSTSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDK 245
M + S + R F++EP+GEK V + G+ L L T G +K
Sbjct: 1 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINK 42
>AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII collagen
protein.
Length = 1626
Score = 32.3 bits (70), Expect = 0.99
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 138 KHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQEWMKD 317
KH N + + + +L V E+LGKR G +YV +G F V++ +++F + + D
Sbjct: 234 KHTNGGTKEITGFDLMDLFSVKEILGKR--ENGAQSSYVRMGSFPVVQSTEDVFPQGLPD 291
>BC112124-1|AAI12125.1| 264|Homo sapiens N-acylsphingosine
amidohydrolase (alkaline ceramidase) 3 protein.
Length = 264
Score = 30.7 bits (66), Expect = 3.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 192 PILLLVSHPLAQQQSFYVFVMYSTF 118
P+++L+ HP AQ++S Y++V++ F
Sbjct: 42 PLMMLLMHPYAQKRSRYIYVVWVLF 66
>BC112122-1|AAI12123.1| 264|Homo sapiens N-acylsphingosine
amidohydrolase 3 protein.
Length = 264
Score = 30.7 bits (66), Expect = 3.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 192 PILLLVSHPLAQQQSFYVFVMYSTF 118
P+++L+ HP AQ++S Y++V++ F
Sbjct: 42 PLMMLLMHPYAQKRSRYIYVVWVLF 66
>AF347024-1|AAL83822.1| 264|Homo sapiens alkaline ceramidase
protein.
Length = 264
Score = 30.7 bits (66), Expect = 3.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 192 PILLLVSHPLAQQQSFYVFVMYSTF 118
P+++L+ HP AQ++S Y++V++ F
Sbjct: 42 PLMMLLMHPYAQKRSRYIYVVWVLF 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,856,115
Number of Sequences: 237096
Number of extensions: 1392680
Number of successful extensions: 6786
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6785
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -