Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28m02
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 130 HHKNIETLLLSQWVR 174
           HH+N +T  +S+WV+
Sbjct: 319 HHRNADTHEMSEWVK 333


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 460 NYIMYIISNNAIIKYNKCYMDKNYK 386
           N   YI++ N   KY + Y D  YK
Sbjct: 196 NIETYIVNTNYSSKYMREYNDPEYK 220


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 460 NYIMYIISNNAIIKYNKCYMDKNY 389
           NY  Y  +NN    Y K Y + NY
Sbjct: 100 NYNNYNYNNNNYNNYKKLYYNINY 123


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 367 RIGVMSFCNFYPYN 408
           R+GV SFC  +P++
Sbjct: 285 RMGVASFCKAFPWH 298


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 127 VHHKNIETLLLSQWVRNQ*QNW 192
           VH ++  T  +S WVR    NW
Sbjct: 336 VHFRSPSTHNMSPWVRQVFLNW 357


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 256 TT*ALSKPPVSSRFPKTSPTPANS 185
           TT ++    + S+ PKT  TP +S
Sbjct: 521 TTKSMEAANIMSKLPKTVRTPTDS 544


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 379 MSFCNFYPYNIYYI 420
           +S  N  PYN YYI
Sbjct: 134 LSLKNIEPYNNYYI 147


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 379 MSFCNFYPYNIYYI 420
           +S  N  PYN YYI
Sbjct: 134 LSLKNIEPYNNYYI 147


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 4/17 (23%), Positives = 12/17 (70%)
 Frame = +1

Query: 367 RIGVMSFCNFYPYNIYY 417
           ++  M+FC  +P+++ +
Sbjct: 205 KVSPMTFCRVFPFHLMF 221


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 330 LHCRRPSSILEITLYLSLVPKIDPRRHRPYRSPRFQVVFLKL 205
           LH  R   IL +   LSLV  +   R   Y S   +V FL +
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNM 240


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 4/17 (23%), Positives = 12/17 (70%)
 Frame = +1

Query: 367 RIGVMSFCNFYPYNIYY 417
           ++  M+FC  +P+++ +
Sbjct: 205 KVSPMTFCRVFPFHLMF 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,411
Number of Sequences: 438
Number of extensions: 3053
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)