Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l24
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   4.2  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   4.2  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   5.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 387 LSYGNCRNAFVIAPDKSLRAYGPPLCS 307
           L++G   +   + P K +  YGPP CS
Sbjct: 568 LTHGETFSRLGVRPPKGVLLYGPPGCS 594


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 218 LSPGASNTIASNIQNSKNRKIPVKKLKKKH 129
           L  G+ +T+ +  +NS  R+  +K L K+H
Sbjct: 105 LGEGSYSTVLTATENSTKREYAIKVLDKRH 134


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 221 RLSPGASNTIASNIQNSKNRKIPVKKLKKKHRELT 117
           R+ PGA+  I  N +N+K  K  VK++ +   E++
Sbjct: 487 RVVPGATPVIDGNKKNNKKTKPAVKQVAQPTAEVS 521


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 268 NHYRAGVHSLDARELDASPREHPTQ*PAIFKIQKTEKS 155
           N +   +H   A  LDAS   +P Q P +   Q  E S
Sbjct: 618 NRFPQNIHHPSANLLDASAALNPVQNPLLMPQQNHEHS 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,123
Number of Sequences: 5004
Number of extensions: 24565
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)