Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l24
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    28   3.1  
02_03_0335 + 17882461-17882527,17882616-17884723                       27   7.3  
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    27   9.6  

>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 188 SNIQNSKNRKIPVKKLKKKHRE 123
           +N +N+KNR+ P KK +KK R+
Sbjct: 499 TNAKNAKNRRNPQKKKRKKERK 520


>02_03_0335 + 17882461-17882527,17882616-17884723
          Length = 724

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 170 LNFEYCWLLCWMLPGRGVKFTG 235
           ++F +C+LL W  P RG   +G
Sbjct: 13  ISFTFCYLLTWQSPDRGSDASG 34


>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 185 CWLLCWMLPGRGVKFTGVQRMHSRSIMIS 271
           CW   W LP   ++F  V R+H+ S+  S
Sbjct: 728 CW--DWCLPNPPIRFGNVTRLHNMSLSCS 754


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,796
Number of Sequences: 37544
Number of extensions: 153713
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)