Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l24
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine r...    27   8.7  

>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -2

Query: 206 ASNTIASNIQNSKNRKIPVKKLKKKHRELTLL 111
           A+  ++S+  NSK+  IP+KK   ++R+++ +
Sbjct: 16  AARKVSSSATNSKSSAIPIKKDTNRNRKVSAI 47


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -2

Query: 206 ASNTIASNIQNSKNRKIPVKKLKKKHRELTLL 111
           A+  ++S+  NSK+  IP+KK   ++R+++ +
Sbjct: 16  AARKVSSSATNSKSSAIPIKKDTNRNRKVSAI 47


>AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine
           receptor, class x protein21 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 114 FIMSIFDFRTLCFFFLLNLIFTHYFAETRIST 19
           FI ++F F   C FF  +  FT  F ETR  T
Sbjct: 133 FICTLFYFILGCHFFYSDTSFTFGFRETRRCT 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,048
Number of Sequences: 27780
Number of extensions: 139590
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)