Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l24
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.91 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.91 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 188 WLLCWMLPGRGVKFTG 235
           W++C+    +GVK+TG
Sbjct: 217 WIMCYFCIWKGVKWTG 232


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 188 WLLCWMLPGRGVKFTG 235
           W++C+    +GVK+TG
Sbjct: 270 WIMCYFCIWKGVKWTG 285


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 188 WLLCWMLPGRGVKFTG 235
           W+LC+    +GVK TG
Sbjct: 184 WILCYFCIWKGVKTTG 199


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 301 GENKTSARFKTNHYRAGVHSLDARELDASPREHPT 197
           G+++   R K +    G  S   RE D   RE+PT
Sbjct: 294 GQSEAEKRLKLDEDADGAVSPLRREKDRGSREYPT 328


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 364 CFCHCSR*KLTSLRPTFM 311
           C+C C + K+T+ R   M
Sbjct: 2   CYCTCEKCKITANRQQVM 19


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 96  DFRTLCFFFLLNLIFTHYFAETRISTAGRGA 4
           + R   ++FL   + T YF E   +  G+ A
Sbjct: 255 EIRGQLYYFLHKQLMTRYFLERMSNDLGKTA 285


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 96  DFRTLCFFFLLNLIFTHYFAETRISTAGRGA 4
           + R   ++FL   + T YF E   +  G+ A
Sbjct: 255 EIRGQLYYFLHKQLMTRYFLERMSNDLGKTA 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,988
Number of Sequences: 438
Number of extensions: 1587
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)