Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l18
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   4.0  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   6.9  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   6.9  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    25   9.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.1  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 212 FWRHELVQSFKENRHY*RMGYSFHAKRFRKTPLNIDVIVQCCP---ISCVAFINCI*TVW 42
           FW    + +F  + H  R       K+ +K P +I VI++C     I  +    C  + W
Sbjct: 29  FWTCSYLLNFLYHHHCSRDLIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAW 88

Query: 41  CQTRSLSHL 15
           C   ++  L
Sbjct: 89  CVCSNIREL 97


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 257 LLNG*NFMKLSQTQLQFLPHFQFSDKQIY 343
           +LN    MK  +  L FLP F   D++ Y
Sbjct: 354 ILNNLALMKKKELNLNFLPSFDVWDREYY 382


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 306 FYLIFNSPINKFTIQKFYTML--RTFLDYFF 392
           F L +N P+NK+    FYT +  + ++DY F
Sbjct: 351 FRLKYNLPLNKWDRATFYTKMSPKGYIDYPF 381


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 589 TYILPQQKIGFPHLRIIEKQLNLLKKATAIRDAEDRTRWKQLTRQATV 446
           +Y+  Q K GF  +RI+ ++L++  KA  +   E       +T+QAT+
Sbjct: 97  SYVDIQVKYGF--VRIVNERLDICDKAYELAAVECPVEPGIITKQATI 142


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 450 VACLV-SCFHLVRSSASRMAVAFFSKFNCFSIILKWGKPIFC 572
           +ACL+ + FH+ +++A+ +      K    S  L  G  +FC
Sbjct: 441 IACLIFAIFHVQQTTANAVEHFKLRKITALSAALSLGTVLFC 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,415
Number of Sequences: 5004
Number of extensions: 45135
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)