Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l18
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1155 + 30808985-30809084,30809531-30809632,30809727-308098...    29   4.1  

>03_05_1155 +
           30808985-30809084,30809531-30809632,30809727-30809800,
           30810035-30810051,30810341-30810410,30810498-30810534,
           30811010-30811057,30811298-30811385,30811407-30811512,
           30812143-30812286
          Length = 261

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 336 KFTIQKFYTMLRTFLDYFFLLILRRFLHY 422
           +++ +K YT+  TFL YF  LI + FL Y
Sbjct: 155 RYSNKKAYTLCYTFLFYFSELIFQIFLRY 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,134
Number of Sequences: 37544
Number of extensions: 254965
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)