Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l17
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.75 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 295 CSTSSIFNIVA 263
           CSTSSIFN+VA
Sbjct: 269 CSTSSIFNLVA 279


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 291 EHPAAKVLVELAQLQDEEVGDGTTS 365
           EHP  K+L EL    D  + D + S
Sbjct: 102 EHPNGKILRELQTDYDRRLHDNSPS 126


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 663 IIGLAEGFLHDDND 622
           I G+ EG  HDD D
Sbjct: 92  IAGIIEGQYHDDED 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,963
Number of Sequences: 438
Number of extensions: 3630
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)