Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l15
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 157 2e-39
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 57 2e-09
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 50 3e-07
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 50 4e-07
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 49 6e-07
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 44 3e-05
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 42 7e-05
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 41 2e-04
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 39 6e-04
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 37 0.003
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 36 0.006
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 35 0.014
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 34 0.018
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.68
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 29 0.68
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 1.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 28 1.6
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 26 4.8
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 8.4
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 157 bits (380), Expect = 2e-39
Identities = 67/135 (49%), Positives = 98/135 (72%)
Frame = +3
Query: 198 VPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 377
VPRNF+LLEELE+G+KG+G+ + S+GL + DD+TL+ W I+GP + +ENR+YSLKI
Sbjct: 4 VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIH 63
Query: 378 CGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRRLMTL 557
C YPD PP F+SRI++ V+ +TG V+ ++ L W+R+Y+++TVL ++++ M
Sbjct: 64 CDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMAS 123
Query: 558 KDNMKLSQPPEGSTF 602
N KL QPPEGSTF
Sbjct: 124 SSNRKLPQPPEGSTF 138
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 57.2 bits (132), Expect = 2e-09
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +3
Query: 204 RNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 383
R+ R+ +EL Q+ G W + D ++H GM GP TPYE + + IE
Sbjct: 5 RSRRIAKELADVQQDKQAGIQVWTINDD----ISHLKGMFRGPEGTPYEGGYFVVDIEIP 60
Query: 384 TRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILA-RWQRDYTIKTVLQEVRRLM 551
YP PP F ++I+ V+SQTG + + IL +W YT+K+ L ++ L+
Sbjct: 61 IDYPFRPPKMNFDTKIYHPNVSSQTGAI---CLDILKDQWSPVYTMKSALISLQSLL 114
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 50.0 bits (114), Expect = 3e-07
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Frame = +3
Query: 213 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 392
RL+ + ++ Q+ G +S SD+ M W +IIGP TP+E+ + L + +Y
Sbjct: 8 RLMRDFKRMQQDPPAG-VSASPVSDNVML---WNAVIIGPADTPFEDGTFKLVLSFDEQY 63
Query: 393 PDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRRLMTLKDN 566
P++PP +F+S + H N + +D Q RW Y + +L ++ L+ +N
Sbjct: 64 PNKPPLVKFVSTMFHPNVYANGELCLDILQ----NRWSPTYDVAAILTSIQSLLNDPNN 118
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 49.6 bits (113), Expect = 4e-07
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +3
Query: 285 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTG 461
D D L HW G I GP T YE + + + YP PPT F S + H N S
Sbjct: 53 DSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNI 112
Query: 462 LVDNRQVPILARWQRDYTIKTVLQEVRRLMTLKDN 566
+D + +W Y ++T+L ++ L+ +N
Sbjct: 113 CLD----ILKDKWSAVYNVQTILLSLQSLLGEPNN 143
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 49.2 bits (112), Expect = 6e-07
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 300 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 479
L HW I+GP +PY ++ L I T YP +PP F +RI+ +NS +
Sbjct: 30 LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSIC---- 85
Query: 480 VPILA-RWQRDYTIKTVLQEVRRLMT 554
+ IL +W TI VL + L+T
Sbjct: 86 LDILRDQWSPALTISKVLLSICSLLT 111
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 213 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 392
RL +E Q G G + L+ D+ + HW +I GP TPYE + L I Y
Sbjct: 7 RLHKEYASFQAGDISGLLL--LKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGY 64
Query: 393 PDEPPTARFISRI-HMN 440
P PP+ F ++I H N
Sbjct: 65 PISPPSVYFQTKIVHPN 81
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 42.3 bits (95), Expect = 7e-05
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Frame = +3
Query: 213 RLLEELEQGQKGVGDGTISWGLESDDD-MTLTHWTGMIIGPPRTPYENRMYSLKIECGTR 389
RL EE +Q ++ G + +S D + L +W I G P+T +E +Y L +
Sbjct: 8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 67
Query: 390 YPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRRLMTLKDN 566
YP PP RF + H N S G V + W+ TIK +L ++ L+ D+
Sbjct: 68 YPTRPPKCRFTPPLFHPNVYPS--GTVCLSILNEEEGWKPAITIKQILLGIQDLL---DD 122
Query: 567 MKLSQPPEGSTF 602
++ P + +
Sbjct: 123 PNIASPAQTEAY 134
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +3
Query: 213 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 392
RL++E ++ + DG I+ G ++DD W +I GP TP+E +Y ++ + Y
Sbjct: 9 RLMKEYKELTENGPDG-ITAGPSNEDDFFT--WDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 393 PDEPPTARF 419
P PPT +F
Sbjct: 66 PLGPPTLKF 74
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 39.1 bits (87), Expect = 6e-04
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 LLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYP 395
L ++L++ QK G S GL DD ++ W MIIGP T YE + + YP
Sbjct: 10 LRKQLKEIQKNPPQG-FSVGLV--DDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYP 66
Query: 396 DEPPTARFISRI-HMN 440
PP +F + I H N
Sbjct: 67 LMPPKMKFTTEIWHPN 82
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +3
Query: 300 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 479
+ W +I GPP TPYE Y + YP +PP R I+ N++ L +
Sbjct: 34 ILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDF 93
Query: 480 VPILARWQRDYTIKTVLQEVRRLMT 554
P W + + T+L + MT
Sbjct: 94 HP--KSWNPSWMVSTILVGLVSFMT 116
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 291 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 434
D L HW +GP + Y + ++ YP +PPT F +RI+
Sbjct: 33 DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIY 80
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 34.7 bits (76), Expect = 0.014
Identities = 26/113 (23%), Positives = 53/113 (46%)
Frame = +3
Query: 213 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 392
R+++E+E + G ++ E + L ++ + GP ++ YE + L++ Y
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTEDN----LRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 393 PDEPPTARFISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRRLM 551
P PP RF+++I+ V+ + + + W I+TVL ++ LM
Sbjct: 62 PMMPPNVRFLTKIYHPNVDKLGRICLS---TLKKDWSPALQIRTVLLSIQALM 111
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 327 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 467
GP TPY ++ + +E + YP + P+ F++RI ++ +G V
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSV 84
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.1 bits (62), Expect = 0.68
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 207 NFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHW----TGMIIGPPRTPYENRMYSLKI 374
++RLL E+ G +WG+ +DD ++ W +G I+ +TPYE M L+
Sbjct: 340 SYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIV-QRKTPYEEAMTKLEE 398
Query: 375 E 377
E
Sbjct: 399 E 399
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 138 KLRLIQSSFIA*ALPKQIRFI*SKYGNLQQSN 43
K RL++S F +LP Q+RF+ Y NL+ N
Sbjct: 27 KFRLLESQFALYSLPCQLRFV--HYNNLEDPN 56
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 497 SSKNWDLSIIHKSSLTIDTVHMNPRNKAGCWW 402
S+ NW S+++ SL D + NP+NK W
Sbjct: 291 STVNWVQSVLNLPSLLSDDLMANPKNKERFEW 322
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 317 SSPMSKSHIIIAFKTPRNGSIA 252
SSPMS+SH+ I+ + PR G A
Sbjct: 439 SSPMSESHVQISSEMPRTGMSA 460
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 324 IGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 434
I P Y+ + +I+ YP +PP + +++I+
Sbjct: 58 IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIY 94
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 204 RNFRLLEELEQGQKGVGDGTISW 272
R+ R+LE LEQ +G+ GT+ +
Sbjct: 628 RSVRMLEPLEQHGRGIYSGTLGY 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,007
Number of Sequences: 5004
Number of extensions: 61212
Number of successful extensions: 154
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -