Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l12
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 149 1e-36
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 53 2e-07
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 50 2e-06
03_04_0003 + 16227213-16227220,16229085-16229282,16229565-162296... 35 0.061
07_03_1451 - 26623913-26624123,26624504-26624593,26624691-266249... 29 2.3
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 29 4.0
03_01_0478 - 3665246-3665356,3665627-3665728,3665770-3665964,366... 28 5.3
03_05_0927 - 28874819-28877098,28877689-28877691 28 7.0
03_05_0607 + 26083072-26084154 27 9.2
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020... 27 9.2
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 149 bits (362), Expect = 1e-36
Identities = 77/144 (53%), Positives = 102/144 (70%), Gaps = 6/144 (4%)
Frame = +2
Query: 176 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEME 355
E+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S IE++ E+QH G
Sbjct: 53 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQA 112
Query: 356 --TPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDIT-KTIEKEH 526
+++ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++ + ++K H
Sbjct: 113 EFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGH 172
Query: 527 --EDPIET-QHQKTFIGKIPIMLK 589
E+ ET ++ K FIGK+PIML+
Sbjct: 173 DCEEVTETMEYPKVFIGKVPIMLR 196
>04_04_1323 +
32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Frame = +2
Query: 185 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP 364
++ C ++FDE GL+ Q++S++EF+ +Q + + + ++ + P
Sbjct: 148 EKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPS---YDPSNRGPG 204
Query: 365 KYR---LKFDQIYLSKPTHW----EKDGAPSPMMPNEARLRNLTYSAPLYVDI-TKTIEK 520
+R +KF ++ L +P W + D + P ARL+N+TYS+ + V++ +
Sbjct: 205 GWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVYSM 264
Query: 521 EHEDPIETQHQK 556
E D +T + K
Sbjct: 265 EKSDKAKTGNDK 276
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Frame = +2
Query: 185 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP 364
++ C ++F E LV Q++S+++F+ +Q++ + E+ E + + P
Sbjct: 99 EKLCKEASRSFFRETRLVSHQINSYNDFVSHGLQKMFDSLD--EVTVEPDYDPSKKVGPW 156
Query: 365 KYR-LKFDQIYLSKPTHW----EKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEHE 529
++ +KF ++ L +P W + D + P ARL+ +TYS+ + V++T + H+
Sbjct: 157 RHATIKFGRVELEEPVFWVDNCDLDVETLKLKPKHARLQKMTYSSKMKVEMTVQVYSLHK 216
Query: 530 DPIETQHQKTFIGKIPIM 583
+ +I + IM
Sbjct: 217 SDKAKTGEDPYIQRKDIM 234
>03_04_0003 +
16227213-16227220,16229085-16229282,16229565-16229657,
16230152-16230218,16230377-16230467,16230558-16230610,
16230784-16230848,16230905-16230968
Length = 212
Score = 34.7 bits (76), Expect = 0.061
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 446 PNEARLRNLTYSAPLYVDITKTIEKEHEDPIETQHQKTFIGKIPIMLK 589
P+ RL + TYSAP+ DI T+ K++E + IG +PIML+
Sbjct: 91 PHFCRLTDRTYSAPVLADIEYTVGKQYE---LKRKPNFIIGYLPIMLR 135
>07_03_1451 -
26623913-26624123,26624504-26624593,26624691-26624920,
26625692-26625794,26625908-26626150,26626263-26626352,
26626537-26626808
Length = 412
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 405 GLDK*IWSNLRRYFGGVSISPEKCCASACNSMGGESSTIRC 283
G+DK S Y+G P K CAS C +G + S++RC
Sbjct: 42 GVDKRESSRSYLYWGAAIDCPGKHCAS-CAGLGHQESSLRC 81
>06_01_0263 +
1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 509 TIEKEHEDPIETQHQKTFIGKIPIMLKIYILL 604
T E +E +E + QKTF IP++L++Y ++
Sbjct: 110 TAEGPNEALLEGEPQKTFAHSIPLLLEVYEII 141
>03_01_0478 -
3665246-3665356,3665627-3665728,3665770-3665964,
3666067-3666216,3666437-3666523,3666626-3666865
Length = 294
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +2
Query: 203 VINAYFDEKGLVRQQLDSFDEFIQM-SVQRIVEDSPPIELQAEAQHFSGEMETPPKYRLK 379
++ A F +K R +L + +Q+ +Q + + P+ + SG E PP +K
Sbjct: 93 IVGAVFPDKRK-RTKLSDEEWSVQLLPIQFLFLSASPVIVMRFVSK-SGGKEYPPHVPVK 150
Query: 380 FDQIYLSKPTHWEKDGAPSPMMPNEARL--RNLTYSAP 487
+ L + T ++ DG S MP+ L R Y P
Sbjct: 151 ATSLLLMEVTDYKLDGLDSNAMPSHLALTVRGSLYPRP 188
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 575 ESCQ*MFSDVAFQ*DPHVLSLLFL*YQH--IKVPNMLNY 465
E CQ MF V D V+S LFL + H VPN ++Y
Sbjct: 220 EGCQAMFEIVKKDQDKWVVSKLFLAHTHELANVPNKVHY 258
>03_05_0607 + 26083072-26084154
Length = 360
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +2
Query: 221 DEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPPKYRLKF------ 382
D KGL L+S+D + ++ + + ++ G + P +RLK+
Sbjct: 167 DVKGLDHLCLESWDSSLAVTAREEKLNFEGFQMDYRGIPKDGNIVGPFAFRLKYPAGFRP 226
Query: 383 DQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 484
++ YL + W+K PSP + N R+ T A
Sbjct: 227 NRNYLEEVVRWQKLAFPSPYL-NARRVEPATPQA 259
>01_06_0253 -
27901204-27901251,27901673-27901744,27901944-27902030,
27902484-27902574,27903706-27903769,27904354-27904461,
27905124-27905181,27905813-27905956,27906307-27906372,
27907227-27907299,27908439-27908500,27908923-27909000,
27909124-27909229,27909317-27909483,27909961-27910048,
27911204-27911313,27911833-27911928,27912354-27912461,
27912568-27912711,27913850-27914065
Length = 661
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Frame = +2
Query: 347 EMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEH 526
+ E PP Y K+ Y S W K SP+ L + ++ T IE
Sbjct: 434 QKEPPPSYLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVIIETTLDIENSS 493
Query: 527 EDPI--ETQHQKTFIGKIPIMLKIYIL 601
+ E + +I I + LKI+ L
Sbjct: 494 SQKVWQEVEFVFGWIYVIEMALKIFSL 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,723
Number of Sequences: 37544
Number of extensions: 286672
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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