Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l12
(626 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa... 270 2e-72
BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DN... 270 2e-72
BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (D... 68 2e-11
AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subu... 68 2e-11
BC126356-1|AAI26357.1| 1115|Homo sapiens eukaryotic translation ... 34 0.47
BC126354-1|AAI26355.1| 1116|Homo sapiens eukaryotic translation ... 34 0.47
AF284615-1|AAF91480.1| 1115|Homo sapiens initiation factor 2-alp... 34 0.47
AF193339-1|AAF61199.1| 1115|Homo sapiens eukaryotic translation ... 34 0.47
AF110146-1|AAD19961.1| 1115|Homo sapiens eukaryotic translation ... 34 0.47
AC104134-2|AAY24331.1| 970|Homo sapiens unknown protein. 33 0.83
AJ404614-1|CAC17726.1| 823|Homo sapiens B-cell lymphoma/leukaem... 32 1.9
AB043584-1|BAB32731.1| 894|Homo sapiens zinc finger protein hRi... 32 1.9
BC101466-1|AAI01467.1| 1849|Homo sapiens SET binding factor 2 pr... 31 4.4
AY234241-1|AAO62733.1| 1849|Homo sapiens SET binding factor 2 pr... 31 4.4
AB051553-1|BAB21857.1| 1123|Homo sapiens KIAA1766 protein protein. 31 4.4
Z49258-4|CAH69900.1| 540|Homo sapiens transketolase-like 1 prot... 30 5.8
Z49258-1|CAH69899.1| 596|Homo sapiens transketolase-like 1 prot... 30 5.8
X91817-1|CAA62925.1| 557|Homo sapiens transketolase protein. 30 5.8
BC025382-1|AAH25382.2| 596|Homo sapiens transketolase-like 1 pr... 30 5.8
>X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa
subunit protein.
Length = 1174
Score = 270 bits (663), Expect = 2e-72
Identities = 124/147 (84%), Positives = 138/147 (93%), Gaps = 1/147 (0%)
Frame = +2
Query: 167 ITPELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSG 346
ITP+LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+PPI+LQAEAQH SG
Sbjct: 17 ITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASG 76
Query: 347 EMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEH 526
E+E PP+Y LKF+QIYLSKPTHWE+DGAPSPMMPNEARLRNLTYSAPLYVDITKT+ KE
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 527 EDPIETQHQKTFIGKIPIMLK-IYILL 604
E+ ++TQHQKTFIGKIPIML+ Y LL
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLL 163
Score = 34.3 bits (75), Expect = 0.36
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 537 LKRNIRKHLLARFLLCLRSTYCLLNSLTDR 626
L+ +K + + + LRSTYCLLN LTDR
Sbjct: 140 LQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
>BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide B, 140kDa protein.
Length = 1174
Score = 270 bits (663), Expect = 2e-72
Identities = 124/147 (84%), Positives = 138/147 (93%), Gaps = 1/147 (0%)
Frame = +2
Query: 167 ITPELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSG 346
ITP+LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+PPI+LQAEAQH SG
Sbjct: 17 ITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASG 76
Query: 347 EMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEH 526
E+E PP+Y LKF+QIYLSKPTHWE+DGAPSPMMPNEARLRNLTYSAPLYVDITKT+ KE
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 527 EDPIETQHQKTFIGKIPIMLK-IYILL 604
E+ ++TQHQKTFIGKIPIML+ Y LL
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLL 163
Score = 34.3 bits (75), Expect = 0.36
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 537 LKRNIRKHLLARFLLCLRSTYCLLNSLTDR 626
L+ +K + + + LRSTYCLLN LTDR
Sbjct: 140 LQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
>BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide B protein.
Length = 1133
Score = 68.1 bits (159), Expect = 2e-11
Identities = 43/134 (32%), Positives = 70/134 (52%)
Frame = +2
Query: 188 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPPK 367
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + + A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 368 YRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEHEDPIETQ 547
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-----RII 127
Query: 548 HQKTFIGKIPIMLK 589
IG++PIML+
Sbjct: 128 RNALPIGRMPIMLR 141
>AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subunit
RPC2 protein.
Length = 1133
Score = 68.1 bits (159), Expect = 2e-11
Identities = 43/134 (32%), Positives = 70/134 (52%)
Frame = +2
Query: 188 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPPK 367
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + + A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 368 YRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEHEDPIETQ 547
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-----RII 127
Query: 548 HQKTFIGKIPIMLK 589
IG++PIML+
Sbjct: 128 RNALPIGRMPIMLR 141
>BC126356-1|AAI26357.1| 1115|Homo sapiens eukaryotic translation
initiation factor 2-alpha kinase 3 protein.
Length = 1115
Score = 33.9 bits (74), Expect = 0.47
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 263 EFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP-KYRLKFDQIYL-SKPTHWEKDGAPS 436
E + V R V+ +E ++F+ +E PP K++ K D+I+L + T W +PS
Sbjct: 629 ELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWPL-SSPS 687
Query: 437 PMMPNEARLRNL-TYSAPLYVDI 502
PM ++R + +S +++I
Sbjct: 688 PMDAPSVKIRRMDPFSTKEHIEI 710
>BC126354-1|AAI26355.1| 1116|Homo sapiens eukaryotic translation
initiation factor 2-alpha kinase 3 protein.
Length = 1116
Score = 33.9 bits (74), Expect = 0.47
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 263 EFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP-KYRLKFDQIYL-SKPTHWEKDGAPS 436
E + V R V+ +E ++F+ +E PP K++ K D+I+L + T W +PS
Sbjct: 630 ELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWPL-SSPS 688
Query: 437 PMMPNEARLRNL-TYSAPLYVDI 502
PM ++R + +S +++I
Sbjct: 689 PMDAPSVKIRRMDPFSTKEHIEI 711
>AF284615-1|AAF91480.1| 1115|Homo sapiens initiation factor 2-alpha
kinase 3 protein.
Length = 1115
Score = 33.9 bits (74), Expect = 0.47
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 263 EFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP-KYRLKFDQIYL-SKPTHWEKDGAPS 436
E + V R V+ +E ++F+ +E PP K++ K D+I+L + T W +PS
Sbjct: 629 ELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWPL-SSPS 687
Query: 437 PMMPNEARLRNL-TYSAPLYVDI 502
PM ++R + +S +++I
Sbjct: 688 PMDAPSVKIRRMDPFSTKEHIEI 710
>AF193339-1|AAF61199.1| 1115|Homo sapiens eukaryotic translation
initiation factor 2 alpha kinase PEK protein.
Length = 1115
Score = 33.9 bits (74), Expect = 0.47
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 263 EFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP-KYRLKFDQIYL-SKPTHWEKDGAPS 436
E + V R V+ +E ++F+ +E PP K++ K D+I+L + T W +PS
Sbjct: 629 ELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWPL-SSPS 687
Query: 437 PMMPNEARLRNL-TYSAPLYVDI 502
PM ++R + +S +++I
Sbjct: 688 PMDAPSVKIRRMDPFSTKEHIEI 710
>AF110146-1|AAD19961.1| 1115|Homo sapiens eukaryotic translation
initiation factor 2 alpha kinase PEK protein.
Length = 1115
Score = 33.9 bits (74), Expect = 0.47
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 263 EFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP-KYRLKFDQIYL-SKPTHWEKDGAPS 436
E + V R V+ +E ++F+ +E PP K++ K D+I+L + T W +PS
Sbjct: 629 ELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWPL-SSPS 687
Query: 437 PMMPNEARLRNL-TYSAPLYVDI 502
PM ++R + +S +++I
Sbjct: 688 PMDAPSVKIRRMDPFSTKEHIEI 710
>AC104134-2|AAY24331.1| 970|Homo sapiens unknown protein.
Length = 970
Score = 33.1 bits (72), Expect = 0.83
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 263 EFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP-KYRLKFDQIYL-SKPTHWEKDGAPS 436
E + V R V+ +E ++F+ +E PP K++ K D+I+L + T W +PS
Sbjct: 484 ELAREKVMREVKALAKLEHPGIVRYFNAWLEAPPEKWQEKMDEIWLKDESTDWPL-SSPS 542
Query: 437 PMMPNEARLRNL 472
PM ++R +
Sbjct: 543 PMDAPSVKIRRM 554
>AJ404614-1|CAC17726.1| 823|Homo sapiens B-cell lymphoma/leukaemia
11B protein.
Length = 823
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 221 DEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP 364
+E GLV Q +FD ++++ I DSP ++ + +G TPP
Sbjct: 262 EEMGLVAQHPSAFDRVMRLNPMAI--DSPAMDFSRRLRELAGNSSTPP 307
>AB043584-1|BAB32731.1| 894|Homo sapiens zinc finger protein hRit1
alpha protein.
Length = 894
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 221 DEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPP 364
+E GLV Q +FD ++++ I DSP ++ + +G TPP
Sbjct: 333 EEMGLVAQHPSAFDRVMRLNPMAI--DSPAMDFSRRLRELAGNSSTPP 378
>BC101466-1|AAI01467.1| 1849|Homo sapiens SET binding factor 2
protein.
Length = 1849
Score = 30.7 bits (66), Expect = 4.4
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +2
Query: 215 YFDEKGLVRQQLDSFDEFIQMSVQRI-VEDSPPIELQAEAQHFSGEM--ETPPKYRLKFD 385
+ E+G + D FDE + V+RI VE++ P+++ + + ++ P + F
Sbjct: 416 FVSERGPPYRSCDLFDELVAFEVERIKVEENNPVKMIKHVRELAEQLFKNENPNPHMAFQ 475
Query: 386 QI-YLSKPTHWEKDGAPSPMMPNEARLRNL 472
++ ++ +H P P + NEAR++ L
Sbjct: 476 KVPRPTEGSHLRVHILPFPEI-NEARVQEL 504
>AY234241-1|AAO62733.1| 1849|Homo sapiens SET binding factor 2
protein.
Length = 1849
Score = 30.7 bits (66), Expect = 4.4
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +2
Query: 215 YFDEKGLVRQQLDSFDEFIQMSVQRI-VEDSPPIELQAEAQHFSGEM--ETPPKYRLKFD 385
+ E+G + D FDE + V+RI VE++ P+++ + + ++ P + F
Sbjct: 416 FVSERGPPYRSCDLFDELVAFEVERIKVEENNPVKMIKHVRELAEQLFKNENPNPHMAFQ 475
Query: 386 QI-YLSKPTHWEKDGAPSPMMPNEARLRNL 472
++ ++ +H P P + NEAR++ L
Sbjct: 476 KVPRPTEGSHLRVHILPFPEI-NEARVQEL 504
>AB051553-1|BAB21857.1| 1123|Homo sapiens KIAA1766 protein protein.
Length = 1123
Score = 30.7 bits (66), Expect = 4.4
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +2
Query: 215 YFDEKGLVRQQLDSFDEFIQMSVQRI-VEDSPPIELQAEAQHFSGEM--ETPPKYRLKFD 385
+ E+G + D FDE + V+RI VE++ P+++ + + ++ P + F
Sbjct: 387 FVSERGPPYRSCDLFDELVAFEVERIKVEENNPVKMIKHVRELAEQLFKNENPNPHMAFQ 446
Query: 386 QI-YLSKPTHWEKDGAPSPMMPNEARLRNL 472
++ ++ +H P P + NEAR++ L
Sbjct: 447 KVPRPTEGSHLRVHILPFPEI-NEARVQEL 475
>Z49258-4|CAH69900.1| 540|Homo sapiens transketolase-like 1
protein.
Length = 540
Score = 30.3 bits (65), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 227 KGLVRQQLDSFDEFIQMSVQ--RIVEDSPPIELQAEAQHFSGEMETPPKYRL 376
K + R++ D+ + I+ +Q R ++ PPIE E M +PP YR+
Sbjct: 178 KPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVRMTSPPDYRV 229
>Z49258-1|CAH69899.1| 596|Homo sapiens transketolase-like 1
protein.
Length = 596
Score = 30.3 bits (65), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 227 KGLVRQQLDSFDEFIQMSVQ--RIVEDSPPIELQAEAQHFSGEMETPPKYRL 376
K + R++ D+ + I+ +Q R ++ PPIE E M +PP YR+
Sbjct: 234 KPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVRMTSPPDYRV 285
>X91817-1|CAA62925.1| 557|Homo sapiens transketolase protein.
Length = 557
Score = 30.3 bits (65), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 227 KGLVRQQLDSFDEFIQMSVQ--RIVEDSPPIELQAEAQHFSGEMETPPKYRL 376
K + R++ D+ + I+ +Q R ++ PPIE E M +PP YR+
Sbjct: 178 KPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVRMTSPPDYRV 229
>BC025382-1|AAH25382.2| 596|Homo sapiens transketolase-like 1
protein.
Length = 596
Score = 30.3 bits (65), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 227 KGLVRQQLDSFDEFIQMSVQ--RIVEDSPPIELQAEAQHFSGEMETPPKYRL 376
K + R++ D+ + I+ +Q R ++ PPIE E M +PP YR+
Sbjct: 234 KPMPRERADAIIKLIESQIQTSRNLDPQPPIEDSPEVNITDVRMTSPPDYRV 285
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,613,599
Number of Sequences: 237096
Number of extensions: 1645926
Number of successful extensions: 2765
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2763
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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