Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l12
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...   231   3e-61
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    62   2e-10
Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z81527-8|CAI91171.1|  537|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z81527-7|CAI91170.1|  517|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical ...    30   1.2  
U97405-10|AAB53005.1|  309|Caenorhabditis elegans Hypothetical p...    28   4.8  
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    28   6.3  
Z82262-2|CAB05152.1|  248|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score =  231 bits (565), Expect = 3e-61
 Identities = 103/152 (67%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
 Frame = +2

Query: 167 ITPELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSG 346
           I+ E WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSPP+ELQ+E QH   
Sbjct: 24  ISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGT 83

Query: 347 EMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEH 526
           +ME P K+ LKF+QIYLSKPTHWEKDGAP PMMPNEARLRNLTY++PLYVDITK + ++ 
Sbjct: 84  DMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRD- 142

Query: 527 EDPIETQHQKTFIGKIPIMLK-IYILLTKQFD 619
           +   E  + K F+GK+P+ML+  Y +L+   D
Sbjct: 143 DSATEKVYDKVFVGKVPVMLRSSYCMLSNMTD 174


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
 Frame = +2

Query: 197 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHFSGEMETPPKYRL 376
           W+++ A+   +GLV+Q L SFD F+Q  ++ I+  +  I   A            P + L
Sbjct: 29  WLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDAN-----------PNFYL 77

Query: 377 KFDQIYLSKPTHWE-KDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEHEDPIETQHQ 553
           K+  I + KP+  E  +     + P E RLR++TYSAP+ VDI  T   +         +
Sbjct: 78  KYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQ-----RVFKK 132

Query: 554 KTFIGKIPIMLK 589
              IG++PIML+
Sbjct: 133 DLIIGRMPIMLR 144


>Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical
           protein F35E12.7d protein.
          Length = 577

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 341 SGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNE--ARLRNLTYSAP-LYVDIT 505
           S   +  P   +KFD  Y+S P   E + A +  +P E  ++  NLT+ A   Y+D+T
Sbjct: 75  SAVYDVSPGDSIKFDYFYISSPAEKEVEYAVNQTLPYEVISKTGNLTFFATYTYIDMT 132


>Z81527-8|CAI91171.1|  537|Caenorhabditis elegans Hypothetical
           protein F35E12.7c protein.
          Length = 537

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 341 SGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNE--ARLRNLTYSAP-LYVDIT 505
           S   +  P   +KFD  Y+S P   E + A +  +P E  ++  NLT+ A   Y+D+T
Sbjct: 75  SAVYDVSPGDSIKFDYFYISSPAEKEVEYAVNQTLPYEVISKTGNLTFFATYTYIDMT 132


>Z81527-7|CAI91170.1|  517|Caenorhabditis elegans Hypothetical
           protein F35E12.7b protein.
          Length = 517

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 341 SGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNE--ARLRNLTYSAP-LYVDIT 505
           S   +  P   +KFD  Y+S P   E + A +  +P E  ++  NLT+ A   Y+D+T
Sbjct: 75  SAVYDVSPGDSIKFDYFYISSPAEKEVEYAVNQTLPYEVISKTGNLTFFATYTYIDMT 132


>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 341 SGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNE--ARLRNLTYSAP-LYVDIT 505
           S   +  P   +KFD  Y+S P   E + A +  +P E  ++  NLT+ A   Y+D+T
Sbjct: 75  SAVYDVSPGDSIKFDYFYISSPAEKEVEYAVNQTLPYEVISKTGNLTFFATYTYIDMT 132


>AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical
           protein Y59A8B.2 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 384 SNLRRYFGGVSISPEKCCASACNSMGGESSTIRCTDI*INSSKLSNCCLTRPFS 223
           S + R  G +++S  +C     +S   E +TI   +I  NSS   + CL   FS
Sbjct: 167 SPVNRLLGSITVSEIRCLTCGASSATFEENTIISVEIPSNSSCSLDMCLRSHFS 220


>U97405-10|AAB53005.1|  309|Caenorhabditis elegans Hypothetical
           protein T09B4.2 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 425 GAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEH-EDPIETQHQKTF 562
           G PS  +P   + R+L  S+ LY D+T+ I     E   E Q +  F
Sbjct: 9   GTPSNYIPTSNKRRSLDSSSRLYPDLTEQISNARTEKTSEQQDENDF 55


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -3

Query: 339 KCCASACNSMGGESSTIRCTDI*INSSKLSNCCLTRPFSSK*ALMTIQQASC 184
           K C    +S    SS+  C D+  +S  +SNC     + +    +++ +  C
Sbjct: 173 KTCGYCTSSSSSSSSSSTCADLVNSSIGVSNCASMASYCTNSVYLSLMKTQC 224


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 369 IVLNLTKFIYLNLLIGRKMELHLP*CPMKHVFVI*HIRHLYMLI 500
           I+  LT FIY+ ++IG K   HL     +H+++     H YM I
Sbjct: 198 IICFLTPFIYIPIIIGMKKHRHLH--SQQHIYI-----HEYMFI 234


>Z82262-2|CAB05152.1|  248|Caenorhabditis elegans Hypothetical
           protein C43F9.5 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 369 YFGGVSISPEKCCASACNSMG-GESSTIRCTDI*INSSKLSNCCLTRP 229
           Y+   ++     CA+    +G G     +CT    NS  L+NCC T P
Sbjct: 50  YWTSQTVRNPYTCANGGRKIGVGCYYNYQCTPYAANSVCLNNCCCTNP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,698
Number of Sequences: 27780
Number of extensions: 269219
Number of successful extensions: 704
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)