Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l11
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    33   0.039
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    30   0.37 
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    28   1.5  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.5  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.5  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   4.5  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   7.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    25   7.9  

>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +3

Query: 306 KALHTKGE--RELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDE 473
           ++ HT G    +L+  L+ EI  E+     ++   P   +   V+G  A VVL  +  DE
Sbjct: 49  RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDE 107

Query: 474 TIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFE 587
            IR+T NV+  V       D   E+Q+F+E   + + +
Sbjct: 108 NIRITMNVSQDVT------DAVPEEQDFTEFEDEQELQ 139


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +3

Query: 342 EFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSD- 518
           E L  E+  ER  Q  +S+P  + GF    D     + +QL+   I    N   T D D 
Sbjct: 128 EVLPSEVELERTYQDQQSVPDAISGFQPDMDPRLREVLEQLEHSDI----NDEETSDFDE 183

Query: 519 DFEGDVQTEKQEFSEMRSKPQFE 587
           +FE  V + K + SE  ++P  E
Sbjct: 184 EFEKLVASGKADESEFYAQPFVE 206


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +3

Query: 321 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 467
           K ERE+ E L  E+    K   V +LPA V   T KGD  +  LTK  +
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 376 LRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCSKLVEARVPSNLREQLMCHIPLV 197
           L SAT S+   S SS + F+ ++  P       E+   K  + R P NL   +   +PLV
Sbjct: 4   LTSATDSASLESDSSRNQFIINSLLPWYSCSEHEFPHRKARKRRSPKNLDWSVSVQMPLV 63

Query: 196 KSR 188
            S+
Sbjct: 64  TSK 66


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 496 TLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 323
           +LN T   ++ S  + +T S+ +P T   ST+A          SAT SS + +TSSL P
Sbjct: 231 SLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSSSAQYNTSSLLP 283


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 475  VSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 338
            V+ LS   K+ S      V  S+++G ++   +  SA ISS++NST
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNST 1392


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 485 DTNCFIFKLLC*NNFSTVSLYSKAFDFSRERL--DLLCFAFSNYFFCQELY 339
           +TN F++ + C   + TVSL S A +        D +C+ + N     EL+
Sbjct: 15  ETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 492 NVNHTVD-SDDFEG-DVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQD 644
           N  H+V  S DF   +V++E  + +E  S  +FE    +  T LGF+ S LQD
Sbjct: 5   NTLHSVSISTDFPSPNVESEAADVNEYSSTSKFETLGNQSSTNLGFSNS-LQD 56


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYND 677
           D +D + +++ EK+E  E + KP    ++   D T G     L+D  +   DE +D
Sbjct: 268 DDEDEDEELEGEKEEEEEEKEKP----EISNYDETEGKVNFSLEDSESLEFDEGSD 319


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 351 SGTLPVLFHLSCEAPSTRSRSCKYWNGCVASWWKPGSHLTFES 223
           SG LP L +  C +   RSRSC     C +      S L F S
Sbjct: 392 SGVLPFLTNGGCYSYICRSRSCPSKYQCYSCRCARNSSLEFTS 434


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = +3

Query: 417 FTVKGDGAEVVLTKQLKDETIRVTFNVNHTV------DSDDFEGDVQTEKQEFSEMRSKP 578
           F   G G   +L + LKD   ++ F+V+HT       + D  +    T K+EF ++ ++ 
Sbjct: 24  FGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVT-KEEFQKLVAEE 82

Query: 579 QFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDV 680
           +F    V      G +   +Q+  A +     D+
Sbjct: 83  KFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDI 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,510
Number of Sequences: 5004
Number of extensions: 54612
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)