Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l11
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700...    37   0.018
08_02_1354 - 26337628-26338540,26339638-26339981                       32   0.38 
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           30   1.5  
07_03_0571 - 19602755-19603831                                         29   2.7  
05_01_0096 + 654074-654499,654673-655326                               29   2.7  
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    29   3.5  
07_01_0945 - 7973736-7974275,7974446-7974580                           29   3.5  
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    28   8.2  

>03_06_0072 -
           31469595-31469684,31469762-31469848,31469968-31470036,
           31470117-31470185,31470269-31471306
          Length = 450

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = -2

Query: 451 KTTSAPSPFTVKPSTSA-GRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQ---PQLQ 284
           ++ +  +P    PS+ A G  + F +   +    V  S+ S SP + SAFNP    P LQ
Sbjct: 103 RSCATKAPVNDPPSSLAIGLLMVFTSGMGSATGRVGASSLSASPSISSAFNPAALLPFLQ 162

Query: 283 VLEWL-CSKLVEARVPS 236
             +WL CS L+ +  PS
Sbjct: 163 ATKWLPCSDLITSAAPS 179


>08_02_1354 - 26337628-26338540,26339638-26339981
          Length = 418

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 439 APSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 323
           +PSP T  PST+ GRD   C  R   +  + N   +L+P
Sbjct: 168 SPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 336 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 464
           LV F+   ++ E K + ++ L  E+E F  + +G+EV L++ +
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEVALSRPI 503


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/104 (23%), Positives = 44/104 (42%)
 Frame = +3

Query: 216 MSCSRRLDGTLASTSLLHNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKVKS 395
           MSCS  L    +S++L     +  SCG   +    +  R  +  L   I + R  QK+  
Sbjct: 1   MSCSH-LSTAWSSSALATRRRSAPSCGSSGRL---QVVRCSLRELRSRIDSVRNTQKITE 56

Query: 396 LPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFE 527
               V    V+     VV ++   +  + V +N+N  + ++D +
Sbjct: 57  AMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDID 100


>05_01_0096 + 654074-654499,654673-655326
          Length = 359

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +3

Query: 300 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETI 479
           G   LH  G+  L   L   ++A          P  V G  +  D   +VLT   +   +
Sbjct: 100 GQPPLHRAGDSRLRMSLN--VLAVNIVSSDVGYPVLVYGTVIARDDETLVLTGPTRSIEV 157

Query: 480 R--VTFNVNHTVDSDDFEGDVQTEKQEFSE 563
              V F VN  +  ++ +GDV  + +EFS+
Sbjct: 158 SDSVFFEVNLKLKEEEDDGDVVVDDREFSK 187


>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 510  DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAA 656
            D D +    Q E    ++ +  P FE+  V+GD  +    S  Q+P  A
Sbjct: 1004 DEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGIVVHPISLDQEPSNA 1052


>07_01_0945 - 7973736-7974275,7974446-7974580
          Length = 224

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 318 CEAPSTRSRSCKYWNGCVASWWKPGSHLTFESSSCAI 208
           C  P   S   + W GC A+W  P + L+  S S A+
Sbjct: 166 CRWPRVASTGARQWQGCHAAWLSPVAPLS-SSLSAAV 201


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 451 KTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 353
           +  + PS   +  + + GR LTF  LRSA +S+
Sbjct: 41  RADACPSAVALADAAAGGRALTFAELRSAVLST 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,923,734
Number of Sequences: 37544
Number of extensions: 372737
Number of successful extensions: 1094
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)