Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l11
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 33 0.26
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 32 0.45
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 31 0.60
U41263-11|AAO38595.1| 516|Caenorhabditis elegans Hypothetical p... 30 1.4
U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical p... 30 1.4
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 30 1.4
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 30 1.4
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 30 1.4
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 4.2
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 4.2
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 28 7.4
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.8
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 27 9.8
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 27 9.8
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.8
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 27 9.8
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 27 9.8
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 27 9.8
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 27 9.8
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 27 9.8
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 27 9.8
AC084155-4|AAG23365.1| 410|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical
protein F59A2.3 protein.
Length = 236
Score = 51.6 bits (118), Expect = 5e-07
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 333 ELVEFLTEEIVAERKAQKVK---SLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNH 503
EL + L EI AE++ ++ GF V AEV LTK+ E I V FNVNH
Sbjct: 41 ELQQALNREIEAEQQLSSDNLQGAVAPTFAGFQVTNKDAEVRLTKKNGSEDILVVFNVNH 100
Query: 504 TVDSDDFEGDVQTEKQEFSEMR-SKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDV 680
+VD D EG Q + + + P F V++ +GD L F + P DEY+
Sbjct: 101 SVDMD--EGFDDEPSQAVAPVPVAMPPFTVEITKGDQRLCFHLELV--PVDDQPDEYD-- 154
Query: 681 FGIDE 695
F ++E
Sbjct: 155 FRVEE 159
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 377 FAFSNYFFCQELYQFSFTFRVKRLQPAAAAASIGMVV*QAGGSQGPI*P--SRAAHVPYT 204
F +Y + Q+L + + ++ Q AAAAA+ G QGP P S++ +P
Sbjct: 336 FQSDHYRYSQQLQHVQWQQQQQQQQAAAAAAAAAAAASAGGHHQGPPPPTSSQSNQIPSN 395
Query: 203 PSKVAFH 183
P+ V H
Sbjct: 396 PNSVPVH 402
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 31.9 bits (69), Expect = 0.45
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 351 TEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIR-VTFNVNHTVDSDDFE 527
T+EI + A K++ +E V+ E + Q E++R ++ NV H VD+D F+
Sbjct: 32 TKEIERLKAAHKMQVDALNIELTAVQNVLKEKSIINQSLTESLRNISANVRHRVDADSFK 91
Query: 528 GDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDVFGIDE 695
+++ E E +R + + V+ F SY + N + +DE
Sbjct: 92 IELKREAMEKFHIRVELLAQCAKVKELERDKFQLSYQMQELRTIGEHQNLIKMVDE 147
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 300 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETI 479
G K K REL + I AE+K +++K L A+V+ KG+ + K+++D
Sbjct: 823 GTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDYEKQKGEKIKEEAEKEIQDHRK 882
Query: 480 RV 485
+V
Sbjct: 883 KV 884
>U41263-11|AAO38595.1| 516|Caenorhabditis elegans Hypothetical
protein T19D12.2c protein.
Length = 516
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 469 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 320
S +CF +S PSP T P T F +T +S+ STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428
>U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical
protein T19D12.2a protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 469 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 320
S +CF +S PSP T P T F +T +S+ STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 484 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 332
T S+ S F T+S P P S D +FC+ SAT S T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 484 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 332
T S+ S F T+S P P S D +FC+ SAT S T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 484 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 332
T S+ S F T+S P P S D +FC+ SAT S T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 448 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 338
T S+PSP ++ PSTS LT S+T SS ST
Sbjct: 473 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 448 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 338
T S+PSP ++ PSTS LT S+T SS ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 448 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 338
T S+PSP ++ PSTS LT S+T SS ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
>AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical
protein Y39G10AR.5 protein.
Length = 917
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 187 FTAVCVRLTNPLKFAVLTHVCSTLWVALPMPLIF 86
F VC LTN +K V H C+ L + L+F
Sbjct: 27 FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 472 SSLSCFVKTTSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 332
S S +T+APS T PS+S+ T + S+T SS ++STS+
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 472 SSLSCFVKTTSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 332
S S +T+APS T PS+S+ T + S+T SS ++STS+
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTT 614
+ D+ E DV+ E++E SE K E+ +R +TT
Sbjct: 419 EEDEEEEDVEEEEEEKSEAELKNGKEISPLRSETT 453
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 384 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 268
SVL ++F+ G +P+L H S E + + C GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 539 LNITLKVIRVHSVINVECDTNCFIFKLLC*NNFSTVSLYSK 417
LNI +K+I S ++ IF LLC NN + SLY++
Sbjct: 437 LNIFVKIIHFISQQKLDFAFKEIIFDLLCVNNRTQRSLYAE 477
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 539 LNITLKVIRVHSVINVECDTNCFIFKLLC*NNFSTVSLYSK 417
LNI +K+I S ++ IF LLC NN + SLY++
Sbjct: 437 LNIFVKIIHFISQQKLDFAFKEIIFDLLCVNNRTQRSLYAE 477
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 384 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 268
SVL ++F+ G +P+L H S E + + C GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 602 RRHHPWFHLLLSSRSTCSFC 661
R +H F+LL+S R TC C
Sbjct: 54 RENHMKFYLLISERQTCRIC 73
>AC084155-4|AAG23365.1| 410|Caenorhabditis elegans Hypothetical
protein Y45G5AM.3 protein.
Length = 410
Score = 27.5 bits (58), Expect = 9.8
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 414 GFTVKGDGAEVVLTKQLKDETIRVTFNVNH-TVDSDDFEGDVQTEKQEFSEMRSKPQFEV 590
GF K D E V +K +I + N NH + +DF+ +V Q + S +FEV
Sbjct: 80 GFCSKAD-QETVSRTPIKIHSIEILDNENHYLLSREDFD-NVVVRVQFHHDFHSGKRFEV 137
Query: 591 DLVR-GDTTLGFTCSYLQDPPAAS 659
+ GD T Y++ P S
Sbjct: 138 VFSQLGDDTQIRWIKYMRKPDVRS 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,920
Number of Sequences: 27780
Number of extensions: 313915
Number of successful extensions: 1111
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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