Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l07
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0026 + 3091053-3091126,3092297-3092368,3092481-3092524,309...    28   2.8  
07_01_0565 + 4188387-4190570                                           27   4.9  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    27   8.6  

>09_02_0026 +
           3091053-3091126,3092297-3092368,3092481-3092524,
           3092932-3092999
          Length = 85

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 222 ALNVHPANNKHHNSRVQHFWRTKAVFCTIHHVYLLVKN 335
           A+     + +  N  ++H W  K   C IH   LL  N
Sbjct: 28  AIRARSVHTQLKNDLIEHIWNRKMFSCPIHGAELLTAN 65


>07_01_0565 + 4188387-4190570
          Length = 727

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 329 NKQIHMMYSTEYGLCAPEV-LYSAIVMFVVGWMYVEGLI 216
           +K + M+      +C P+V +Y+A+V  +V W ++EG I
Sbjct: 282 DKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCI 320


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 139  NYCFTAEIGRVVVITYPCGLARRSTTSNYTN 47
            N+ F    G+ + I+YPC +       N TN
Sbjct: 928  NFTFKTNAGKKLTISYPCVMLNVDVARNNTN 958


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,820,624
Number of Sequences: 37544
Number of extensions: 170414
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)