Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l07
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF016682-6|AAL06054.1|  284|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical
           protein T01G5.3 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 353 IMYYQAIFNKQIHMMYSTEYGLCAPEVLYSAIVMFVVGWMY 231
           I  Y  +FN+Q+   Y   YGL    V Y A++M +  W Y
Sbjct: 111 IYRYMVLFNRQVLTKYFLPYGLIM-SVAYCAVLMAI--WFY 148


>AF016682-6|AAL06054.1|  284|Caenorhabditis elegans Hypothetical
           protein T07D3.3 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 235 IQPTTNITIAEYNTSGAQRPYSVLYIMCICLLK 333
           I P+++     YN SG+ R   ++ I+C+C +K
Sbjct: 94  IPPSSDEHTDYYNVSGSIRSGKLMEIICLCAMK 126


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 223 PSTYIQPTTNITIAEYNTSGAQRPYSVLYIMCICLLKIA 339
           P+ ++QP+    + EY  S  Q PY +     + LL I+
Sbjct: 347 PNVWMQPSMLAAMQEYYASIQQMPYPMTNSTAVALLNIS 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,900,135
Number of Sequences: 27780
Number of extensions: 163549
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)