Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l07
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 228 NVHPANNKHHNSRVQHFWRTKAVFCTIHHVYLLVKNRL 341
           N+   N   HN     +WRT +V  + +  Y  +  +L
Sbjct: 266 NMVEGNESDHNDGRLRYWRTPSVVVSDYSDYSYLDEKL 303


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 155 PSNRNELLLHGRNRQSSSNYLPVRTRK 75
           P N   L +HG   +S  NY  +R  K
Sbjct: 570 PGNLKWLDIHGNFIESLGNYYKIRDSK 596


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 196  VLRFQFLHNSGCPILLIETNY 134
            VLR     ++GCPIL     Y
Sbjct: 1516 VLRLHVWPDNGCPILYFTIQY 1536


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 196  VLRFQFLHNSGCPILLIETNY 134
            VLR     ++GCPIL     Y
Sbjct: 1512 VLRLHVWPDNGCPILYFTIQY 1532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,765
Number of Sequences: 438
Number of extensions: 2155
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)