Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l06
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708... 27 2.1
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064... 27 2.1
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 26 3.7
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 26 4.8
07_03_1225 + 24996082-24996774 25 6.4
02_02_0408 + 9901892-9902004,9903777-9903862,9905019-9905129,990... 25 6.4
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 25 8.5
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 25 8.5
>02_02_0134 +
7082462-7082627,7084199-7084325,7084404-7084611,
7084864-7084990,7085071-7085255,7085332-7085454,
7085777-7085836,7085980-7086117
Length = 377
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 167 LY*IXVSGGLVIYFYERIIAFGPIDHRR 84
LY I GL YFYE + + P +HR+
Sbjct: 213 LYGIFPYSGLKFYFYETMKTYVPEEHRK 240
>01_06_1774 +
39803747-39803825,39805338-39805555,39805856-39806436,
39807239-39808136
Length = 591
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 132 NYEATAYXNLIKLKEQVDVHVXWNVWNGDIGDIAYVFF 245
NY +TA N+++ D H W N ++G + Y F+
Sbjct: 500 NYLSTALANIMRKVTTRDGHSSWLTDNINLGKLDYYFY 537
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 143 GLVIYFYERIIAFGPIDHRRAGNRVGNGDH 54
G V+Y+ RI F + ++ G R G DH
Sbjct: 2227 GTVLYYLVRIEPFTALSIQQQGGRFGQDDH 2256
>11_01_0780 -
6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 87 PVIDWAERNYALVKINYEATAYXNLIKLKEQVDVH 191
PV+ + + ++++ ++A A NL KLK + +VH
Sbjct: 802 PVLKYFKFRCGVLRLAFQAEAMPNLRKLKIEFNVH 836
>07_03_1225 + 24996082-24996774
Length = 230
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 69 NAIPGTPVIDWAERNYALVKINYEATAYXNLIKLKEQVDVH 191
NA+ T IDW +N + +L KLKE V+ H
Sbjct: 99 NALDST-AIDWVNAALVPSPVNPGSAVRLSLAKLKEGVEAH 138
>02_02_0408 +
9901892-9902004,9903777-9903862,9905019-9905129,
9905182-9905307,9905546-9905673,9906634-9906726,
9907873-9908059,9908877-9909637
Length = 534
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 176 FFELY*IXVSGGLVIYFYERIIAFGPIDHRRAGNRV 69
FF + I G LVI+ + IIAF D R+ ++V
Sbjct: 141 FFLVSAIISLGFLVIHTFSMIIAFNGYDERKRSDQV 176
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 75 IPGTPVIDWAERNYALVKINYEATAYXNLIKLKEQVDVHVXWNVW 209
+P +DW+ +N ++ + E NLIK + + +VW
Sbjct: 86 VPTPKHVDWSGKNRLIIGRDSEVDKLFNLIKDRSHTNTPHVVSVW 130
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 99 WAERNYALVKINYEATAYXNLIKLKEQV 182
W + N A IN+ + + N+I+ KE V
Sbjct: 65 WIDENVAREIINHRSLRHPNIIRFKEVV 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,654,466
Number of Sequences: 37544
Number of extensions: 62185
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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