Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l06
(250 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical pr... 26 3.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 3.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 3.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 3.1
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 26 3.1
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 26 3.1
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 26 3.1
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 26 3.1
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 26 3.1
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 26 4.1
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p... 25 5.4
AC024090-7|AAF35429.2| 294|Caenorhabditis elegans Hypothetical ... 25 5.4
>U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical
protein T28D9.4 protein.
Length = 468
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 138 EATAYXNLIKLKEQVDVHVXWNVWNGDIGDIAYVFF 245
+ T Y N IKL + +VH+ ++ W I +I + +
Sbjct: 113 DRTKYKNEIKLLKTFNVHLTYSTWINSILEILALIY 148
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 159 NFXKRWPRNLFLRAHNC 109
N KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 174 EQVDVHVXWNVWNGDIGDIAYVFFD 248
EQV +H W+ W + D Y+ D
Sbjct: 76 EQVQLHANWHTWLEYVADGTYIVGD 100
>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
protein F18A1.1 protein.
Length = 1075
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 177 QVDVHVXWNVWNGDIGDIAYVFFD 248
++D + W WN D+ +I +FD
Sbjct: 200 RIDHNCRWRYWNFDVSNIDINYFD 223
>AC024090-7|AAF35429.2| 294|Caenorhabditis elegans Hypothetical
protein C52E2.1 protein.
Length = 294
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 78 PGTPVIDWAERNYALVKINYEATAYXNLIKLKE 176
P PV W RN+++ KI NL+++K+
Sbjct: 83 PIHPVCRWLNRNFSIEKIIKNFLVALNLLEVKQ 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,799,110
Number of Sequences: 27780
Number of extensions: 47889
Number of successful extensions: 86
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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