Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l06
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   1.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   1.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   1.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   2.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   5.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   7.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   9.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   9.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 171 KEQVDVHVXWNVWN 212
           K+ V V+  WN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 171 KEQVDVHVXWNVWN 212
           K+ V V+  WN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 171 KEQVDVHVXWNVWN 212
           K+ V V+  WN WN
Sbjct: 687 KDLVSVNKSWNKWN 700


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 123 VKINYEATAYXNLIKLKEQVDVHVXWNVWNGDIGD 227
           + + Y   +Y N +KL  +  ++V  N+  G+ GD
Sbjct: 337 IDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGN-GD 370


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 123 VKINYEATAYXNLIKLKEQVDVHVXWNVWNGDIGD 227
           + + Y   +Y N +KL  +  ++V  N+  G+ GD
Sbjct: 337 IDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGN-GD 370


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 102 AERNYALVKINYEATAY 152
           AE NY L++  YE  +Y
Sbjct: 114 AEENYNLLEDIYETLSY 130


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 90  VIDWAERNYALVKI 131
           VI+W E+N   + I
Sbjct: 74  VIEWVEKNLGAIDI 87


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 129 FLRAHNCVRPNRSPACRES 73
           FL   +C RP+R  A   S
Sbjct: 10  FLLLSSCTRPSRGNAVPSS 28


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 129 FLRAHNCVRPNRSPACRES 73
           FL   +C RP+R  A   S
Sbjct: 10  FLLLSSCTRPSRGNAVPSS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,358
Number of Sequences: 438
Number of extensions: 794
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)