Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l01
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    30   0.29 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.6  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   6.3  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   8.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.3  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   8.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 29/114 (25%), Positives = 45/114 (39%)
 Frame = +2

Query: 62  AQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEY 241
           A  S   N  ++ ++ S  +  + E   Q L  L   FIT S+ DSI   E +   D   
Sbjct: 559 ANESISSNHEKLMESESDRLSKKWENP-QLLAQLKSRFITGSLLDSIEGQEEVSQDD--- 614

Query: 242 DDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFLDTVTTNNVSSKYE 403
           ++G DF+  ++ E SS       S +    +N      +   T    N   K E
Sbjct: 615 EEG-DFEDLEDEENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEE 667


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 548 KNKL-NISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRDMNSYFDLSQAYKLHL 715
           KNKL  +  ++     +  ++K L + ++  ++  V+D+  D   + D SQ+  +HL
Sbjct: 655 KNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHL 711


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 329 LQNPPKDRVMFLDTVTTNNVSSKYEEYI 412
           LQ+PPK+R++F D   T      +E YI
Sbjct: 241 LQSPPKNRIVFCDGCNTPFHQLCHEPYI 268


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +1

Query: 454 VFSQHDERAQRQIRRRSSFGQ----NAEANSKTNAKEQTQHFQHGYRRRHAANGNEKISA 621
           VF  H   + +Q RR  S G     N + N+  N     Q+ Q+        N N+  ++
Sbjct: 201 VFQLHHPPSPKQTRRVVSEGPLNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNS 260

Query: 622 NFIQP 636
           N +QP
Sbjct: 261 NDLQP 265


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
 Frame = +1

Query: 418 HCEQPYR*KRVHVFSQHDERAQRQIRRRSSFGQNAEANSKTNAKEQTQHFQHGYRR---- 585
           H E+  R ++  + + HD    +      S         K   K+Q +  +HGY R    
Sbjct: 196 HVEEQERLRKETIAAFHDVNGNKDAVSNESDEDGDFLVKKEKTKKQLEEEEHGYERFLLE 255

Query: 586 ----RHAANGNEKISANFIQPKPHV 648
               + A    E +S+++++ +P V
Sbjct: 256 SAQSKEARKVLEDLSSSYVKQRPSV 280


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 86   VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 253
            +R++K+N  S +  +IEK++       +  +  ++   IS  E+L+   L  DD V
Sbjct: 1069 LRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTV 1124


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +3

Query: 186 LW-KTAFQATKCWTTSIWNMTTALI 257
           LW + A   TK W T IWN    L+
Sbjct: 666 LWNENAIMGTKRWLTKIWNCVHQLL 690


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 392 CSRCWW*PCPKTLLGLWAGFGAKLSRR 312
           C++ W   CPKT+   ++    KLS R
Sbjct: 268 CNQIWAGKCPKTIRMFYSNLYKKLSHR 294


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/76 (25%), Positives = 39/76 (51%)
 Frame = +2

Query: 20   QELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDS 199
            +EL ++  K +LY+ Q +  K +    +   +NIK+ + K+L+      +N    S++  
Sbjct: 1093 KELESLNDKDQLYQLQATKNKELEAKVKECLNNIKS-LTKELENKEEKCQNLSDASLK-Y 1150

Query: 200  ISSNEVLDNIDLEYDD 247
            I   E+ +N+ L+  D
Sbjct: 1151 IELQEIHENLLLKVSD 1166


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 428 CSQCSLCILRICCSRCWW 375
           CSQC+ CILR+    C W
Sbjct: 113 CSQCNKCILRM-DHHCMW 129


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 21/86 (24%), Positives = 42/86 (48%)
 Frame = +3

Query: 24   SSIISNLKLNYMKRKFRLAKTSDK*NKTDRVTSKPALKSSCSF*RRLTKISSHTLWKTAF 203
            S+I+S+  ++ +      A  S +   T+  T   +L  S S  R ++  S++  + T+F
Sbjct: 758  SAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNE-YNTSF 816

Query: 204  QATKCWTTSIWNMTTALILTFTMNTN 281
             A    +T+  + TT+L     +N+N
Sbjct: 817  HAPTVSSTTSSSSTTSLAANKGVNSN 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,275
Number of Sequences: 5004
Number of extensions: 46481
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)