Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28l01
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 33 0.17
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142... 31 0.93
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 2.8
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 29 2.8
11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375 29 5.0
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 28 6.6
11_03_0181 - 11301759-11301838,11302294-11303095 28 8.7
08_02_0640 - 19636968-19638230 28 8.7
03_06_0146 - 31976538-31978643,31978653-31978751 28 8.7
02_04_0014 + 18916942-18917142,18917350-18917628,18917719-189181... 28 8.7
01_07_0360 + 43056226-43057566 28 8.7
01_01_0092 + 722744-723459,723542-723711,723792-724885 28 8.7
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 20 QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVED 196
+E+ ++ KI+ Y Q+++ + QIK N S T +++ Q + NK+F +S
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFSARS 1401
Query: 197 SISSNEV 217
S E+
Sbjct: 1402 FACSEEL 1408
>10_06_0114 -
10911713-10911724,10913642-10913772,10913869-10914229,
10914339-10915081,10918916-10918964,10919063-10919334,
10919426-10919519,10919618-10920000,10920504-10920575,
10920656-10920778,10920875-10921048,10921115-10921579,
10921662-10921839
Length = 1018
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +1
Query: 499 RSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANGNEKISANFIQPKPHVGSGF 660
+S G + +E Q YR R A N I ANF P +GS F
Sbjct: 165 QSDGGNICRDEKREKQREDRNRKQREYRARKKAESNNAILANFDATTPIIGSSF 218
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 463 QHDERAQRQIRRRSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANGNEKI----SANFI 630
QH+E+ QR+ + +NA+ T + +F H R ++ N + S +F
Sbjct: 499 QHEEQTQRRSSELALGSRNADGQHLTKDVPDSHNFPHRKNSRDSSKANGSVEPEASLDFE 558
Query: 631 QPKP 642
PKP
Sbjct: 559 GPKP 562
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 29 NNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLN---KNFITYSVEDS 199
NN++ + + +S+ V ++QNR S +LQ LT L+ N I+ S+ DS
Sbjct: 279 NNLEGTVPAWLGNLSSLVFV-SLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDS 337
Query: 200 ISSNEVLDNIDLEYD 244
+ + L ++ L+Y+
Sbjct: 338 LGNLGALSSLRLDYN 352
>11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375
Length = 159
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 233 LEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALL 331
+E+D D + ++ PSS MTV D ALL
Sbjct: 104 IEWDSERDLPIVPQWTPSSRTRTMTVGDRHALL 136
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 110 SSNIKTRIEKQ-LQFL-TPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEP 283
SSN K +E++ LQF TP N + V ++ +L +D E DD V + E
Sbjct: 513 SSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTIL--VDTENDDSVSAVIQQAIEK 570
Query: 284 SSHW 295
+++W
Sbjct: 571 TNYW 574
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +3
Query: 198 AFQATKCWTTSIWNMT---TALILTF--TMNTNRPRI 293
AF KCWT+ +W+ T T L+ T+ T +T+ R+
Sbjct: 229 AFPHVKCWTSPVWSATSRPTVLLSTWQVTCSTSSHRV 265
>08_02_0640 - 19636968-19638230
Length = 420
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 341 PKDRVMFLDTVTTNNVSSKYEE 406
P D++ FLD V NN YEE
Sbjct: 362 PNDQIFFLDDVMENNKEYSYEE 383
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +2
Query: 221 DNIDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRV-MFLDTVTTNNVS-S 394
D+ID + D +D YD+ + S + +VSD ++ + P++ D + +++
Sbjct: 408 DDIDTDSDMEIDGGKYDDIDSESLYEEESVSDEQSDDEEEPEEFAGGGYDDIDYESLNGD 467
Query: 395 KYEEYIDCIVSNRTVENE 448
+EEY+ ++++ ++NE
Sbjct: 468 DFEEYLQ-VLADGGIDNE 484
>02_04_0014 +
18916942-18917142,18917350-18917628,18917719-18918114,
18924837-18925085
Length = 374
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 197 SISSNEVLDNI-DLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFL 364
++ S+E+L+ + D+E D G D D++ + W N +AL+QN ++ +M L
Sbjct: 245 ALLSDEMLEAVMDVE-DIGQDPDMFLSLNALAGWGNTGTIHLRALVQNQEEEELMRL 300
>01_07_0360 + 43056226-43057566
Length = 446
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 467 CWLKTCT-RFQRYGCSQCSLCILRICCSRCWW*PCPKTLL 351
C+ + C+ + G C+ C L ICC P PKTLL
Sbjct: 320 CFEQACSMEVKECGHQMCAACTLAICCHSK---PNPKTLL 356
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 623 ILYNQNRMWVVDFNRDMNS 679
I YN++R WVVD N D +S
Sbjct: 92 ISYNESRFWVVDANLDNSS 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,890
Number of Sequences: 37544
Number of extensions: 287433
Number of successful extensions: 895
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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