Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28l01
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81047-11|CAB02837.1|  226|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL032663-7|CAA21763.1|  226|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p...    28   5.9  
U40800-8|ABB51192.1|  349|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear recep...    28   7.8  
AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormo...    28   7.8  

>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 548 KNKLNISNTVIDD-DTLLTEMKKLVQILYNQNRMWVVDFNRDMNSYFDLSQAYKLHL 715
           KN+L  +N  I + D + +++K+L + ++  ++  +++   D  +Y D SQ+  +H+
Sbjct: 662 KNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIHM 718


>Z81047-11|CAB02837.1|  226|Caenorhabditis elegans Hypothetical
           protein C41G6.13 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 499 RSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANG 603
           R++F    E+ +KT A E+  HF H    RHA  G
Sbjct: 62  RNTFAPLKESVTKTPADEEAAHFTHRPPYRHATKG 96


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 17  LQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFL---TPLNKNFITYS 187
           L +L N K K+E+YE Q    K   ++   R   +++++ +Q +       LN    +  
Sbjct: 115 LSKLQNAKDKLEIYETQEENQKLEAEVNALRKEVLESKLSEQSELSKVNETLNMKVESLK 174

Query: 188 VEDSIS 205
           +E+ +S
Sbjct: 175 IEEGVS 180


>AL032663-7|CAA21763.1|  226|Caenorhabditis elegans Hypothetical
           protein Y75B12B.8 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 499 RSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANG 603
           R++F    E+ +KT A E+  HF H    RHA  G
Sbjct: 62  RNTFAPLKESVTKTPADEEAAHFTHRPPYRHATKG 96


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +2

Query: 56   YEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ----FLTPLNKNFITYSVEDSISSNEVLD 223
            YE ++S  K  R  K+ +      +++K+ Q    F++P           D  +S ++ +
Sbjct: 1287 YE-KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNS-DMSE 1344

Query: 224  NIDLEYDDGVDFDVYDE 274
              D+E+D+G+DFD  D+
Sbjct: 1345 ESDVEFDEGIDFDSDDD 1361


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +2

Query: 56   YEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ----FLTPLNKNFITYSVEDSISSNEVLD 223
            YE ++S  K  R  K+ +      +++K+ Q    F++P           D  +S ++ +
Sbjct: 1287 YE-KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNS-DMSE 1344

Query: 224  NIDLEYDDGVDFDVYDE 274
              D+E+D+G+DFD  D+
Sbjct: 1345 ESDVEFDEGIDFDSDDD 1361


>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  SKIELYEAQVSTCKNVRQIKQNRSSNIKTRI 133
           SK E  + Q   CK+ RQ+KQ  +S+ K  I
Sbjct: 774 SKTEYIKKQAKQCKSFRQVKQTAASDSKDDI 804


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  SKIELYEAQVSTCKNVRQIKQNRSSNIKTRI 133
           SK E  + Q   CK+ RQ+KQ  +S+ K  I
Sbjct: 774 SKTEYIKKQAKQCKSFRQVKQTAASDSKDDI 804


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 541 NAKEQTQHFQHGYRRRHAANGNEKISANFIQPK 639
           N+ ++ +  QH  ++R AA  N K++++ +QPK
Sbjct: 809 NSLDRNRGMQHPEQKRAAAAANTKLASSSVQPK 841


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 541 NAKEQTQHFQHGYRRRHAANGNEKISANFIQPK 639
           N+ ++ +  QH  ++R AA  N K++++ +QPK
Sbjct: 810 NSLDRNRGMQHPEQKRAAAAANTKLASSSVQPK 842


>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +2

Query: 380 NNVSSKYEEYIDCIVSNRTVENECMFLANMMNVLNXXXXXXXXXXXXXXRIVKQTRKNKL 559
           NN++ K+   +D  V    VEN   F +N++ + N               I   + KN  
Sbjct: 34  NNLA-KFNVLLD-FVPEDVVENNSFFNSNIV-IFNEAYQDSMLSNSKVYEIDSVSLKN-- 88

Query: 560 NISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRD 670
           N+S  V   D+     + L  IL  +  ++VV+F R+
Sbjct: 89  NVSTVVFVSDSAKEHDENLKAILRTERSLFVVEFGRN 125


>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +2

Query: 380 NNVSSKYEEYIDCIVSNRTVENECMFLANMMNVLNXXXXXXXXXXXXXXRIVKQTRKNKL 559
           NN++ K+   +D  V    VEN   F +N++ + N               I   + KN  
Sbjct: 32  NNLA-KFNVLLD-FVPEDVVENNSFFNSNIV-IFNEAYQDSMLSNSKVYEIDSVSLKN-- 86

Query: 560 NISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRD 670
           N+S  V   D+     + L  IL  +  ++VV+F R+
Sbjct: 87  NVSTVVFVSDSAKEHDENLKAILRTERSLFVVEFGRN 123


>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +2

Query: 380 NNVSSKYEEYIDCIVSNRTVENECMFLANMMNVLNXXXXXXXXXXXXXXRIVKQTRKNKL 559
           NN++ K+   +D  V    VEN   F +N++ + N               I   + KN  
Sbjct: 34  NNLA-KFNVLLD-FVPEDVVENNSFFNSNIV-IFNEAYQDSMLSNSKVYEIDSVSLKN-- 88

Query: 560 NISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRD 670
           N+S  V   D+     + L  IL  +  ++VV+F R+
Sbjct: 89  NVSTVVFVSDSAKEHDENLKAILRTERSLFVVEFGRN 125


>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +2

Query: 380 NNVSSKYEEYIDCIVSNRTVENECMFLANMMNVLNXXXXXXXXXXXXXXRIVKQTRKNKL 559
           NN++ K+   +D  V    VEN   F +N++ + N               I   + KN  
Sbjct: 32  NNLA-KFNVLLD-FVPEDVVENNSFFNSNIV-IFNEAYQDSMLSNSKVYEIDSVSLKN-- 86

Query: 560 NISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRD 670
           N+S  V   D+     + L  IL  +  ++VV+F R+
Sbjct: 87  NVSTVVFVSDSAKEHDENLKAILRTERSLFVVEFGRN 123


>U40800-8|ABB51192.1|  349|Caenorhabditis elegans Hypothetical
           protein D2096.7b protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
 Frame = +2

Query: 95  IKQNRSSNIKTRIEKQLQFLTPLNKNF--ITYSVEDSISSNEVLDNIDLEYDDGVDFD-V 265
           I+  R  ++KTR+ +++ FL   + NF  + ++  +  +S   ++ +      G  F+  
Sbjct: 31  IENERRYDVKTRLCERIAFLIYQDSNFGRLPHNSSEVFAS---INRLCKSMPTGFSFEGR 87

Query: 266 YDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFLDTVTTN 382
           Y  Y+P +     T SD      N   +R++    ++T+
Sbjct: 88  YSNYDPETFVGPSTTSDTLQNFPNHSLERILCATLLSTS 126


>AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear receptor
           NHR-124 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 379 GGDRVQKHYSVFGRVLEQSFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQ---HFV 209
           G D + +H  V+ R+L Q   V      P R   +  +N +++   +    VVQ    + 
Sbjct: 297 GQDLLSRHQQVYARILLQMCMVSNPRTGPGRYAAILAINQRLDRQSVITNRVVQCLREYW 356

Query: 208 A*NAVFHRVCDE 173
           A N  F ++  E
Sbjct: 357 APNFFFSKILTE 368


>AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 124 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 379 GGDRVQKHYSVFGRVLEQSFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQ---HFV 209
           G D + +H  V+ R+L Q   V      P R   +  +N +++   +    VVQ    + 
Sbjct: 297 GQDLLSRHQQVYARILLQMCMVSNPRTGPGRYAAILAINQRLDRQSVITNRVVQCLREYW 356

Query: 208 A*NAVFHRVCDE 173
           A N  F ++  E
Sbjct: 357 APNFFFSKILTE 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,607
Number of Sequences: 27780
Number of extensions: 280289
Number of successful extensions: 1032
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)