Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k12
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0404 - 2945611-2948802                                           28   1.6  
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746...    27   3.7  
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277...    26   6.4  
01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656     26   6.4  

>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 51  NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRND 218
           +S+CK  S    I F + NL   ++ L SL    S+C  Q R  ++ F    L ND
Sbjct: 8   HSSCKKCSNRCFIDFLRFNLAFALLLLLSLASPTSSCTEQERSSLLQFLS-GLSND 62


>12_01_0812 -
           7460448-7460507,7460595-7460672,7460772-7460981,
           7461095-7461142,7461270-7461455,7461653-7461656,
           7461766-7461893
          Length = 237

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 332 FFFYLNNYFILVNDIIP 282
           FFFYL+ Y+IL   ++P
Sbjct: 78  FFFYLDRYYILRKSLVP 94


>05_01_0355 -
           2774217-2774318,2774608-2774775,2774872-2775090,
           2775176-2775319,2775485-2775767,2775874-2775929,
           2776012-2776161,2776254-2776340,2776414-2776449,
           2777100-2777162,2777247-2777327,2777407-2777496,
           2777690-2777767,2777855-2778058,2778139-2778186,
           2778262-2778447,2779879-2779978,2780121-2780260
          Length = 744

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 332 FFFYLNNYFILVNDIIP 282
           FFFYL+ YFI    +IP
Sbjct: 114 FFFYLDRYFISRRSLIP 130


>01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656
          Length = 553

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +3

Query: 54  STCKTQSRDDVICFSKL----NLRNDVICLNSLYE*NSTC 161
           S C   S +D  C S      NL ND++  N LY  + TC
Sbjct: 154 SVCNQSSNEDQQCSSDFDCGENLSNDLLNANGLYLPDFTC 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,740,944
Number of Sequences: 37544
Number of extensions: 81264
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)