Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k10
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 49 5e-12
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 31 0.21
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 30 0.36
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 29 0.83
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 28 1.1
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 28 1.5
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 28 1.5
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 2.5
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 27 2.5
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 27 3.4
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.4
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 4.4
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 7.8
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.8
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 48.8 bits (111), Expect(2) = 5e-12
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +1
Query: 460 GNKQTKRNTLKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMHHPERE 639
G+K L +W +E LK Y Y+ + + D + K + VS + LL PE+E
Sbjct: 168 GSKNVTDKHLMVWAFESFLKSFYFKYIQIIEALSFDALLFVKSQMVSTIYDLLKAKPEQE 227
Query: 640 KILLTNIINKLGD 678
+ LL +INKLGD
Sbjct: 228 QNLLKLLINKLGD 240
Score = 37.1 bits (82), Expect(2) = 5e-12
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Frame = +1
Query: 136 DKKGQGIAKNFAESLEYGEKKKWFH-QLPEEPVTLPKTLSTEQIEQLRKEATSALHGDTL 312
+++G+G + + + W++ LPE K ++ + + +L L D+
Sbjct: 17 NEEGEGTIDTKPQGVMFDPGVPWYNIPLPELHED-KKFVNVDHVSELETRGLLLLKEDSE 75
Query: 313 AYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ----HPLGHLDEMTSGNKQTKR 480
+ ++T G++D + +TL++ G DR++A T+L+Q H + L+ + S + R
Sbjct: 76 RF-SETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKALETLLSICSKKSR 134
Query: 481 N 483
N
Sbjct: 135 N 135
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 30.7 bits (66), Expect = 0.21
Identities = 26/103 (25%), Positives = 46/103 (44%)
Frame = +1
Query: 367 TLLNKGAIGDRVAAATILIQHPLGHLDEMTSGNKQTKRNTLKLWYYEDQLKELYGTYVDA 546
T L+ A+ R L+ HP + + + + NK+ + D +K Y TY
Sbjct: 91 TPLHLAAMAGRQDIVEALLLHPDINYNLVNANNKKAYQVATSPQLM-DFMKGFYVTYT-- 147
Query: 547 LNKFAHDTVDANKEKSVSAMSYLLMHHPEREKILLTNIINKLG 675
+ A + A KE+++ +M YL+ H+ + I L + K G
Sbjct: 148 -KETAREFKKAFKERNLESMDYLMRHNEFNDAIDLNEVDIKTG 189
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 499 YYEDQLKELYGTYVDALNKFAHDTVDANKEKSV--SAMSYLLMHHP 630
Y++ +KE YVD NKF+++T+ + ++ S +++L +P
Sbjct: 79 YFQTHVKEFMKEYVDRENKFSNETISKSSAAALMTSMENFILFTNP 124
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 28.7 bits (61), Expect = 0.83
Identities = 29/96 (30%), Positives = 40/96 (41%)
Frame = +1
Query: 172 ESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKEATSALHGDTLAYETKTNRSGSSD 351
ES+ KK F + + L T+S+EQ QL E + G T + N +
Sbjct: 327 ESITVNPKKHRFLIMASDG--LWDTMSSEQAVQLVGEWADTVLGKTT---NEKNTTQDDK 381
Query: 352 HQWAKTLLNKGAIGDRVAAATILIQHPLGHLDEMTS 459
W+ I D AAT LI+H LG D+ S
Sbjct: 382 QSWSLFKKTSKVIDDN--AATHLIRHSLGGSDQRIS 415
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 220 QVADETISFFHHIQGFRRNSLRYPGLSYHLRSYQLDRN 107
QVA++ FFH+ G R+ + SYH +Y +D N
Sbjct: 632 QVAEKVKRFFHYY-GINRHKMTTLTPSYHAETYGVDDN 668
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 463 NKQTKRNTLKLWYYEDQLKELYGTYVDALNKFAHDTVDAN 582
N + + T+ ++ ED + +L+G Y + K +D +DA+
Sbjct: 49 NGEMEDETMLVYTEEDNISQLWGLYEMSREKLENDDIDAS 88
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 199 KWFHQLPEEPVTLPKTLSTEQIEQLRKEATSALHGDTLAYETKTNR-SGSSDHQWAKTLL 375
K HQ+ E + STE +E L SALH + K + G +++ W T +
Sbjct: 546 KPIHQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQV 605
Query: 376 NKGAIG 393
K G
Sbjct: 606 RKDVSG 611
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 101 TLITVKLIRTQMIRKARVSQRISPKALNMVKKRNGFISYLKNQSRCQKHYRQN 259
T+ +V+L TQ + V + + PK + V K GF+ + KN R R+N
Sbjct: 529 TVSSVRLGHTQRHLR-HVPEYLLPKGMQAVNKDIGFVPFKKNNRRKVFKSRKN 580
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 301 RARHWWLPFLIVQF 260
R+ WWLP+++V+F
Sbjct: 113 RSHAWWLPYIVVEF 126
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +1
Query: 352 HQWAKTLLNKGAIGDRVAAATILIQHPLGHLDEMTSGNKQTKRNTLKL-WYYEDQLKELY 528
+ W+ N D A QHP G + E S + ++ L W Y L +Y
Sbjct: 382 YNWSVIRKNMHTYADNFLKAVAEFQHPNGSMSEQFSRDDGHQKGARDLTWSYSSLLNAIY 441
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 466 KQTKRNTLKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMH-HPEREK 642
KQ K LK Y D YGT V + A VDA K+ +V+ SY H P+ E
Sbjct: 36 KQDKGAALKSIY--DYHVRPYGTVVQSQIAKASPIVDAAKQATVNVKSYYDEHAKPKVEN 93
Query: 643 I 645
I
Sbjct: 94 I 94
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 126 LISLTVISVSLIN*YVFLKSFMLHCKLLYHVTLNINKARENL 1
LIS V L++ +K +++ +L Y + L I ARENL
Sbjct: 829 LISSLRSKVDLLDRKFLIKEYLVLQQLKYSINLLITAARENL 870
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 493 LWYYEDQLKELYGTYVDALNKFAHDTVDA 579
L+ + ++KE+ G + D L++ A D +DA
Sbjct: 543 LYRFFVEMKEINGEFADKLSRVALDCIDA 571
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.8
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 5/164 (3%)
Frame = +1
Query: 58 KHKRFEENILIDEAYTNYGQADKNADDKKGQGIAK-NFAESL--EYGEKKKWFHQLPEEP 228
++KR + IL+ + + +A K + ++K N E L E G K + +
Sbjct: 1297 EYKRHNQEILL--SLNSSTSTSSDASRLKNELVSKENLIEELNQEIGHLKSELETVKSKS 1354
Query: 229 VTLPKTLSTEQ--IEQLRKEATSALHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRV 402
L + Q IEQL + T YE N+S +Q + L K + +
Sbjct: 1355 EDLENERAQNQSKIEQLELKNTKLAAAWRTKYEQVVNKSLEKHNQIRQQLSQKTSELEAK 1414
Query: 403 AAATILIQHPLGHLDEMTSGNKQTKRNTLKLWYYEDQLKELYGT 534
A + L + Q++ +T+ L + +EL T
Sbjct: 1415 VAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKEELSST 1458
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 247 LSTEQIEQLRKEATSALHGDTLAYETKTNRSGSSDHQWAK 366
L Q+ L K++ SALH +AY+ G DHQ K
Sbjct: 1113 LQLAQLMVLNKDSRSALHAVRVAYDILKETLG-PDHQNTK 1151
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 271 LRKEATSALHGDTLAYETKTNRSGS 345
LR+ + LHG LAY+ +SGS
Sbjct: 222 LRQSSVEYLHGSLLAYKELFEKSGS 246
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 157 AKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKE 282
A+N A E K HQL E + + ++ EQ EQL+ E
Sbjct: 1451 AENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSE 1492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,587
Number of Sequences: 5004
Number of extensions: 57233
Number of successful extensions: 187
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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