Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k10
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 64 1e-10
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 30 2.0
11_08_0083 + 28256844-28258760 29 3.5
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 4.6
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 28 6.0
06_01_1048 + 8252404-8252517,8255799-8256266 28 6.0
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 28 6.0
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101... 28 8.0
01_01_0045 - 330630-331274 28 8.0
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 64.1 bits (149), Expect = 1e-10
Identities = 41/106 (38%), Positives = 56/106 (52%)
Frame = +1
Query: 364 KTLLNKGAIGDRVAAATILIQHPLGHLDEMTSGNKQTKRNTLKLWYYEDQLKELYGTYVD 543
K L K + DR + LIQHPL L E G + L WY+ED LK+ Y +V
Sbjct: 245 KELFLKRVLPDRKLKS--LIQHPLDILPETKDGY-----SLLLFWYWEDCLKQRYEKFVI 297
Query: 544 ALNKFAHDTVDANKEKSVSAMSYLLMHHPEREKILLTNIINKLGDP 681
AL D + K+K++ + LL E+E+ LLT ++NKLGDP
Sbjct: 298 ALEDALKDMLPNLKDKAMKTVFILLKEKAEQERRLLTALVNKLGDP 343
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 196 KKWFHQLPEEPVTLPKTLSTEQIEQLRKEATSALHGDTLAYETKTNRSGSSDHQWAKTLL 375
K F LP++ KT S Q +K ++S G ++ET ++ S +Q + T
Sbjct: 1962 KDTFSNLPQDQEQSAKTFSIASFPQEQKSSSSGSSGMHNSFETAEVKADDSSNQASSTTF 2021
Query: 376 NKGAIGDRVAAA 411
G V +A
Sbjct: 2022 LNGQANQVVQSA 2033
>11_08_0083 + 28256844-28258760
Length = 638
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 199 KWFHQLPEEPVTLPKTLSTEQIEQLRKEATSALHGDTLAYETKTNRSGSSD 351
K+F+Q P+ P L S QI L ATS+ DT TN + D
Sbjct: 60 KFFYQFPDHPALLQAQQSYAQI--LHAPATSSSSDDTTINNNTTNSTSVPD 108
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 457 SGNKQTKRNTLKLWYYEDQLKELYGTY----VDALNKFAHDTVDANKEKS 594
SG+ T+R+ +L Y ED+L Y + D NKFA ++AN S
Sbjct: 413 SGSCLTRRDLNQLIYSEDKLLTAYSDHGKPSKDCTNKFASQEMEANTPTS 462
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 484 TLKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMS 609
TL W +E++ + TY+D L++ DT+D + K A S
Sbjct: 549 TLWNWEFEEEFQRYLPTYLDVLHEV--DTMDCQERKMPGAYS 588
>06_01_1048 + 8252404-8252517,8255799-8256266
Length = 193
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 583 CLHRLCRGQICSRHPRMFHIILLIDLHNTTVSMYSSLFVCCP 458
CL RL RG++CS P H+ H V+++ CP
Sbjct: 132 CLERLRRGELCSELPECRHV-----FHRDCVALWIKSKSTCP 168
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 136 DKKGQGIAK--NFAESLEYGEKKKWFHQLPEEPVTLPKTLSTE 258
DKK +G + N L+ EK W QLPE +T+P T+
Sbjct: 130 DKKEEGNVRKPNAGNGLDL-EKYSWIQQLPEVTITVPVPQGTK 171
>02_01_0141 +
1017654-1017745,1018332-1018389,1018485-1018595,
1018853-1018990,1019559-1019628,1019711-1019766,
1020203-1020328,1020648-1020787,1020932-1021004,
1021095-1021169,1021277-1021591
Length = 417
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 133 DDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQI 264
D + G+G+ N S+++G+K+K + E P T P + QI
Sbjct: 153 DRRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTAPFSEPEAQI 196
>01_01_0045 - 330630-331274
Length = 214
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 250 STEQIEQLRKEATSALH-GDTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ 426
+T+ + R + + H GDT + K R S DH A T + + +VA A L+
Sbjct: 49 ATKNHHRFRLDLLNYYHRGDTASASDKKKRKRSEDHHQAATHVKQEQEAQQVAFAADLVA 108
Query: 427 HPLGHLDEMTSGNKQTKR 480
D+ TS + K+
Sbjct: 109 EE--ETDKETSKKNRKKK 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,441
Number of Sequences: 37544
Number of extensions: 354511
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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