Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k10
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    58   6e-09
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    32   0.44 
Z68318-1|CAA92691.1|  285|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    29   2.4  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    29   3.1  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    29   4.1  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024852-6|ABQ13049.1|   84|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 25/84 (29%), Positives = 50/84 (59%)
 Frame = +1

Query: 433 LGHLDEMTSGNKQTKRNTLKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSY 612
           L  L E++SGN++ +R  L +W +E +LK LY  +++ L +     ++   ++S+  ++ 
Sbjct: 232 LRELTELSSGNQRLRRKILLMWAFEHELKILYQQFIETLVEIIKRPLEEVIKRSLKTLAN 291

Query: 613 LLMHHPEREKILLTNIINKLGDPS 684
            LM  PE E ++L+ ++N  G P+
Sbjct: 292 CLMGRPESENLILSALVNAFGHPN 315



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
 Frame = +1

Query: 178 LEYGEKKKWF-HQLPEEPVTLPKTLSTEQIEQLRKEATSALHGDTLAYETKTNRSGSSDH 354
           +++ E  KW+ +Q+        + ++  +I++L +E    +  D    +TK  +   S+ 
Sbjct: 94  VKHQEGTKWYSYQIDHVHDEKTEKMNASEIQKLLEEGKDEMAQDAALLQTKEKQDNGSEA 153

Query: 355 QWAKTLLNKGAIGDRVAAATILIQ----HPLGHLDEM-TSGNKQTKRNTLKL 495
            W  ++++KG   D+  A  + +     H L +++++  S  KQ  R+ + +
Sbjct: 154 SWLYSVISKGTATDKRTAMQLQMHKSPVHSLEYIEKLIASCKKQGTRDVVDI 205


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 52  TMKHKRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPV 231
           +MK  +   N   D   ++      NAD   G+ +AK + +S++  E KK F +L    +
Sbjct: 138 SMKKTKGAPNSTTDTPVSHKTSITGNADKWVGEDVAKTWMDSIDLAEVKKDFEKLQTMKI 197

Query: 232 TLPKTLST 255
            + K   T
Sbjct: 198 DIDKDCKT 205


>Z68318-1|CAA92691.1|  285|Caenorhabditis elegans Hypothetical
           protein T21B10.1 protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 520 ELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMHHPE 633
           E Y T V  + K+     D NK K+VS M +    HPE
Sbjct: 164 EFYQTPVKNVTKYTEMARDENKPKNVSIMEHAARFHPE 201


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 246 CFWQRDWFFR*LMKPFLFFT--IFKAFGEILCDTLAFLI 136
           C W+ +WF   + +PFL ++  IF  F E L   + +LI
Sbjct: 20  CSWKSEWFETGVKRPFLGYSIMIFGVFIEFLYPPIIYLI 58


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 574 DANKEKSVSAMSYLLMHHPEREKILLTNIINKL 672
           + N EK VS    LL H P    ILL N++  L
Sbjct: 348 EPNTEKKVSCCRALLSHLPTSHSILLANVLKLL 380


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 RKARVSQRISPKALNMVKKRNGFISYLKNQSRCQKH 247
           R++ V QR+ P  +N  K++NGF       ++  KH
Sbjct: 301 RQSLVWQRVFPMEINGKKRKNGFRELFSASTKLSKH 336


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 RKARVSQRISPKALNMVKKRNGFISYLKNQSRCQKH 247
           R++ V QR+ P  +N  K++NGF       ++  KH
Sbjct: 437 RQSLVWQRVFPMEINGKKRKNGFRELFSASTKLSKH 472


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 164 ISPKALNMVKKRNGFISYLKNQSRCQKH 247
           I+P++LN++  R+   +YL +  RC K+
Sbjct: 294 IAPQSLNIISARDDIHAYLNSPDRCPKY 321


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/88 (22%), Positives = 41/88 (46%)
 Frame = +1

Query: 85  LIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQI 264
           +I E +     ++K  + KK     +N  E  ++ ++ + F  +PE   ++ +T + E  
Sbjct: 653 IIREWFLRDANSEKLTEHKKEANRIRNEME--QFHQQLQDFPPIPEITESMTRTQTREAE 710

Query: 265 EQLRKEATSALHGDTLAYETKTNRSGSS 348
           + LR+        DTL  E + NR  ++
Sbjct: 711 QSLRRREKLENQLDTLKIELEENREATA 738


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 118 ADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKE 282
           A+KN +DKK +   K   E  E  EKK+   +  EEP    +    EQ E++ K+
Sbjct: 281 AEKNEEDKKEEEPKKE-EEKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKK 334


>Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical
           protein F14E5.2b protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 546 LEQICPRHSRCKQGEIC*CY--VIFAHAPSGKGKDSTNEHNKQI 671
           +EQ C  H+  K GEI  C   V F H   G  KD T++  KQ+
Sbjct: 710 IEQSCKGHNNDK-GEIIRCLSEVRFEHKVLGSPKDLTDDCKKQL 752


>Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical
           protein F14E5.2a protein.
          Length = 1149

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 546 LEQICPRHSRCKQGEIC*CY--VIFAHAPSGKGKDSTNEHNKQI 671
           +EQ C  H+  K GEI  C   V F H   G  KD T++  KQ+
Sbjct: 710 IEQSCKGHNNDK-GEIIRCLSEVRFEHKVLGSPKDLTDDCKKQL 752


>AC024852-6|ABQ13049.1|   84|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.8 protein.
          Length = 84

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 146 ARVSQRISPKALNMVKK-RNGFISYLKN 226
           A  + R+SP  LN  KK R+GF+ +LKN
Sbjct: 50  ANENLRMSPIELNFWKKLRDGFLDFLKN 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,617
Number of Sequences: 27780
Number of extensions: 323335
Number of successful extensions: 1016
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)