Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k09
(668 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q96H12 Cluster: UPF0439 protein C9orf30; n=11; Amniota|... 42 0.018
UniRef50_UPI0000E81107 Cluster: PREDICTED: hypothetical protein;... 40 0.041
UniRef50_Q28J92 Cluster: UPF0439 protein C9orf30 homolog; n=3; T... 40 0.041
UniRef50_UPI0000DB7383 Cluster: PREDICTED: similar to CG32813-PA... 39 0.095
UniRef50_Q61UJ3 Cluster: Putative uncharacterized protein CBG052... 36 0.88
UniRef50_O22929 Cluster: GCN5-like protein 1; n=3; core eudicoty... 35 2.0
UniRef50_A3AEJ4 Cluster: Putative uncharacterized protein; n=3; ... 34 2.7
UniRef50_UPI0000E47FE5 Cluster: PREDICTED: similar to collagen X... 34 3.6
UniRef50_Q4S1V9 Cluster: Chromosome undetermined SCAF14764, whol... 34 3.6
UniRef50_Q0IMS1 Cluster: Os12g0550500 protein; n=11; Oryza sativ... 33 4.7
UniRef50_P62134 Cluster: DNA double-strand break repair rad50 AT... 33 4.7
UniRef50_Q8RD80 Cluster: S-layer homology domain; n=1; Thermoana... 33 6.2
UniRef50_UPI000065D89E Cluster: Homolog of Brachydanio rerio "De... 33 8.2
UniRef50_A2AGX2 Cluster: Novel protein (Orthologue of PR domain ... 33 8.2
>UniRef50_Q96H12 Cluster: UPF0439 protein C9orf30; n=11;
Amniota|Rep: UPF0439 protein C9orf30 - Homo sapiens
(Human)
Length = 275
Score = 41.5 bits (93), Expect = 0.018
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>UniRef50_UPI0000E81107 Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 274
Score = 40.3 bits (90), Expect = 0.041
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 194 KKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRDEDCF 367
+++AW+ +A N+ V RTA ++R KW N+ AR+ A ++ L++ E F
Sbjct: 43 RQRAWEEIAAAVNALSPVVRRTAEEIRKKWHNMVLDARRELAADKHPLLRQRPQERLF 100
>UniRef50_Q28J92 Cluster: UPF0439 protein C9orf30 homolog; n=3;
Tetrapoda|Rep: UPF0439 protein C9orf30 homolog - Xenopus
tropicalis (Western clawed frog) (Silurana tropicalis)
Length = 365
Score = 40.3 bits (90), Expect = 0.041
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRDEDCFP 370
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R K E
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKGKLFGPES-NS 102
Query: 371 PDGILDKVASLL 406
+ +KVAS++
Sbjct: 103 HQALKEKVASMI 114
>UniRef50_UPI0000DB7383 Cluster: PREDICTED: similar to CG32813-PA,
isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG32813-PA, isoform A - Apis mellifera
Length = 264
Score = 39.1 bits (87), Expect = 0.095
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 194 KKKAWQNLANDFNSSIATVP-RTAAQLRLKWENLKKSAR 307
+K AW LAN++NS + R+A QLR WEN+K R
Sbjct: 44 RKSAWSQLANEYNSMVGPQGIRSAVQLRRCWENMKACKR 82
>UniRef50_Q61UJ3 Cluster: Putative uncharacterized protein CBG05283;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG05283 - Caenorhabditis
briggsae
Length = 324
Score = 35.9 bits (79), Expect = 0.88
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = -3
Query: 213 FCQAFFFSSLFMAFVVLLFIISFTATSCSRSFVSSLVMGAAFVNEFILF*VSTQLKFK 40
+C AFFF++L M F+VL FII F A S F +++ + + IL ++ +F+
Sbjct: 15 YCPAFFFATLIMQFIVLYFII-FFAGKMSAPF--RIMLAHTSICQLILLFITMSCQFR 69
>UniRef50_O22929 Cluster: GCN5-like protein 1; n=3; core
eudicotyledons|Rep: GCN5-like protein 1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 152
Score = 34.7 bits (76), Expect = 2.0
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 254 RTAAQLRLKWENLKKSARKHCANTRNGLIK--TGRDEDCFPPDGILDKVASLLGIGITRQ 427
R++ QLR K E +K A +H A T + L+K G E+CF + ++ L I + +
Sbjct: 43 RSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKF 102
Query: 428 GRRS 439
G+++
Sbjct: 103 GKQT 106
>UniRef50_A3AEJ4 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 559
Score = 34.3 bits (75), Expect = 2.7
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIA--TVPRTAAQLRLKWENLKKSARKHC 316
W+++A++FNS++ RT Q++ W+N+K+ K C
Sbjct: 125 WKDVADEFNSNMPRNAHTRTVKQMKTHWDNVKRDIAKFC 163
>UniRef50_UPI0000E47FE5 Cluster: PREDICTED: similar to collagen XVIII;
n=5; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to collagen XVIII - Strongylocentrotus purpuratus
Length = 1963
Score = 33.9 bits (74), Expect = 3.6
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +2
Query: 194 KKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRD--EDCF 367
KKKAW+ A ++I R+ LRL W +L+ A K+ ++RN KTG +
Sbjct: 1049 KKKAWEEAAITM-AAIGCPNRSGKDLRLLWNDLRSKANKY-RDSRN---KTGEERLSSNA 1103
Query: 368 PPDGILDKVASLLGIGITRQGRRSTSSNLLLQCNRLPAAKRKHKMQEE 511
+ +L + + + GI Q + +S L L N A + +M EE
Sbjct: 1104 RHEMVLSAMTTQVKEGILPQSSETGASTLPLSQN-AGAVELLQRMGEE 1150
>UniRef50_Q4S1V9 Cluster: Chromosome undetermined SCAF14764, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14764,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1046
Score = 33.9 bits (74), Expect = 3.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 230 NSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRD 355
+ S+ T P +LR+KW L+ K +NG++K G++
Sbjct: 66 SGSLHTTPGPGDELRIKWTKLEAQGEKMVLVAQNGMVKVGQE 107
>UniRef50_Q0IMS1 Cluster: Os12g0550500 protein; n=11; Oryza
sativa|Rep: Os12g0550500 protein - Oryza sativa subsp.
japonica (Rice)
Length = 1125
Score = 33.5 bits (73), Expect = 4.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+++A++FN++ T RT QL+ W N+KK K C
Sbjct: 905 WKDVADEFNNNRPTNGHKRTVKQLKTHWGNVKKDIGKFC 943
>UniRef50_P62134 Cluster: DNA double-strand break repair rad50
ATPase; n=3; Methanococcus maripaludis|Rep: DNA
double-strand break repair rad50 ATPase - Methanococcus
maripaludis
Length = 993
Score = 33.5 bits (73), Expect = 4.7
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +2
Query: 197 KKAWQNLANDFNSSIATVPRTAAQLRLKWENL 292
K+ ++N+ N+FN + T+ R +++L+LK EN+
Sbjct: 786 KRLYENILNEFNDILRTLERISSELKLKNENI 817
>UniRef50_Q8RD80 Cluster: S-layer homology domain; n=1;
Thermoanaerobacter tengcongensis|Rep: S-layer homology
domain - Thermoanaerobacter tengcongensis
Length = 842
Score = 33.1 bits (72), Expect = 6.2
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 381 YWTK*LHFWASASHVKVVEVPAQICYYS-VTAYLQLSGNTRCRKSFAKLAYI 533
Y+ K F+A+A+ V V +VP + YYS VT Y ++S N S +++ Y+
Sbjct: 654 YYAKGYLFYATANSVTVGDVPWRGSYYSTVTGYYEISNNQWSFVSGSRVFYV 705
>UniRef50_UPI000065D89E Cluster: Homolog of Brachydanio rerio
"Dermacan.; n=1; Takifugu rubripes|Rep: Homolog of
Brachydanio rerio "Dermacan. - Takifugu rubripes
Length = 1182
Score = 32.7 bits (71), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 230 NSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRD 355
+ S+ T P + +LR+KW L+ K NG++K G++
Sbjct: 32 SGSLHTTPGLSDELRVKWTKLEAQGEKVVLVAHNGVVKVGQE 73
>UniRef50_A2AGX2 Cluster: Novel protein (Orthologue of PR domain
containing 11 (PRDM11)); n=4; Eutheria|Rep: Novel
protein (Orthologue of PR domain containing 11 (PRDM11))
- Mus musculus (Mouse)
Length = 461
Score = 32.7 bits (71), Expect = 8.2
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 194 KKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRDEDCFP 370
+ K W+ +A +S++ VPR+ ++ +W+++K+ + A R L G +P
Sbjct: 183 RDKIWEGIARKI-TSVSQVPRSIKDIKHRWDDMKRRTKDKLAFMRQSLSGPGIGGHTYP 240
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,564,928
Number of Sequences: 1657284
Number of extensions: 11035015
Number of successful extensions: 27996
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27979
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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