Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k09
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    29   0.80 
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   1.8  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   4.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   5.6  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   5.6  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   7.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.9  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 137 QVVAEASSHP*SWVLLLLMNSFYFR*AHS*NL 42
           Q++A  SSH  +W +L+  + F+F   H+ N+
Sbjct: 15  QIIAAESSHTNNWAVLISTSRFWFNYRHTANV 46


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 186 LFMAFVVLLFIISFTATSCSRSFVSSLVMGAAFVNEFILF*VSTQLKFKR 37
           LF     ++ II  T     R   + +  G   VNEFI + V   LK+ R
Sbjct: 413 LFSLIPQIIGIIYLTVMFTGRELDTFMQFGGQVVNEFINYVVKVSLKYPR 462


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 399 HFWASASHVKVVEVPAQICYYSVTAYLQLSGNTR 500
           H+ +SA   + V VP  +C Y   AY+QL  N +
Sbjct: 583 HYISSARQYRPV-VPKDVCDYVTGAYVQLRQNQK 615


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 356 EDCFPPDGILDKVAS 400
           E+C PPD I+DKV S
Sbjct: 273 ENCIPPDLIIDKVFS 287


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 391 FVQYSIWRKAILITSSLNKAVSRVGTVFASRLLQVFPFETKLRCSSG 251
           F++  I++  +L+TS    A      ++ +R   +FP    L  S+G
Sbjct: 54  FIRLKIYKYVVLVTSCDLHAAILGNNIYRARKFAIFPITRTLPFSTG 100


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 201 FFFSSLFMAFVVLLFIIS 148
           +FF+SLF  F++LL II+
Sbjct: 233 YFFNSLFAYFIILLRIIN 250


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 253  GDGCDRRIKVICQVLPSLFFQFIIYGICCLI-IYNFIHRHKL 131
            G G  +  K++C +  ++   ++ YG+   + +Y  + +H L
Sbjct: 1690 GTGTGKSGKLVCNLYKTILKHYVHYGLSTSVPLYTSLEKHNL 1731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,008
Number of Sequences: 5004
Number of extensions: 49122
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)