Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k09
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0487 - 3704763-3705416 34 0.089
09_04_0176 + 15361766-15362836 34 0.12
12_02_0705 + 22317657-22318529 33 0.16
05_04_0081 + 17759158-17760021 33 0.16
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 32 0.36
04_01_0395 + 5189106-5189233,5189300-5189798 31 0.63
11_04_0444 + 17816207-17817436 31 0.83
07_03_0999 - 23216665-23217419,23217626-23217956 31 0.83
06_03_0334 - 19660526-19661755 31 0.83
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 30 1.9
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 5.9
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 28 5.9
08_02_1261 + 25689487-25689666,25690642-25690887,25691032-256911... 28 7.7
>03_01_0487 - 3704763-3705416
Length = 217
Score = 34.3 bits (75), Expect = 0.089
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIA--TVPRTAAQLRLKWENLKKSARKHC 316
W+++A++FNS++ RT Q++ W+N+K+ K C
Sbjct: 125 WKDVADEFNSNMPRNAHTRTVKQMKTHWDNVKRDIAKFC 163
>09_04_0176 + 15361766-15362836
Length = 356
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC---ANTRNGLIKTGRDE 358
W+ +A +FN+++ + RTA Q R W+N+K+ K C A RN DE
Sbjct: 197 WKAVAAEFNTNMPSNGNKRTAKQCRTHWDNVKRDVTKFCGFYAKARNTFTSGYSDE 252
>12_02_0705 + 22317657-22318529
Length = 290
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+++A++FN++ T RT QL+ W N+KK K C
Sbjct: 70 WKDVADEFNNNRPTNGHKRTVKQLKTHWGNVKKDIGKFC 108
>05_04_0081 + 17759158-17760021
Length = 287
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+++A++FN++ T RT QL+ W N+KK K C
Sbjct: 207 WKDVADEFNNNRPTNGHKRTVKQLKTHWGNVKKDIGKFC 245
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 32.3 bits (70), Expect = 0.36
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 320 NTRNGLIKTGRDEDCFPPDGILDKVASLLG 409
+TR GL++ GRD+ FP + + +KV G
Sbjct: 29 DTRKGLVRIGRDQIVFPEEAVFEKVTQSSG 58
>04_01_0395 + 5189106-5189233,5189300-5189798
Length = 208
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+++A++FN++ T R QL+ W N+KK K C
Sbjct: 59 WKDVADEFNNNRPTNGHKRIVKQLKTHWGNIKKDIGKFC 97
>11_04_0444 + 17816207-17817436
Length = 409
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+ +A +FNS++ + R Q R W+N+K+ K C
Sbjct: 194 WKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFC 232
>07_03_0999 - 23216665-23217419,23217626-23217956
Length = 361
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+ +A +FNS++ + R Q R W+N+K+ K C
Sbjct: 125 WKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFC 163
>06_03_0334 - 19660526-19661755
Length = 409
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 206 WQNLANDFNSSIATV--PRTAAQLRLKWENLKKSARKHC 316
W+ +A +FNS++ + R Q R W+N+K+ K C
Sbjct: 194 WKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFC 232
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 254 RTAAQLRLKWENLKKSARKHCANTRNGLIKTGRDEDC-FPPDGILDKVASLLGIGITRQG 430
R A Q++LK KS R A+T + G D + +GI +V S+L +
Sbjct: 562 RVARQIQLKVVKSYKSQRFFGAHTIH--YDLGEDSEAGVDSEGIASQVLSVL----LQND 615
Query: 431 RRSTSSNLLLQCNRLPAAKRKHKMQEELCKARI 529
+R T + LLQCN L E +C I
Sbjct: 616 KRKTQEDNLLQCNILHRGGLMEGEMERICLQEI 648
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 224 DFNSSIATVPRTAAQLRLKWENLKKSA 304
D+ + R A+ LR+KW N+KK A
Sbjct: 909 DYGRDVFHRTRLASDLRVKWRNMKKKA 935
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 200 KAWQNLAND--FNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRDED 361
+AW L ND F S ATV +A+ L W +L S N + ++ GR D
Sbjct: 758 RAWY-LRNDCVFGSGQATVKGSASFLLNLWNSLCPSGSATLENEKGKIVSEGRQSD 812
>08_02_1261 +
25689487-25689666,25690642-25690887,25691032-25691128,
25691233-25691630,25692013-25692267
Length = 391
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 426 KVVEVPAQICYYSVTAYLQLSGNTRCRK 509
K E+ A++ YY A+L L G+ RC K
Sbjct: 225 KESELEAELIYYRSNAFLGLGGDPRCVK 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,211,761
Number of Sequences: 37544
Number of extensions: 321645
Number of successful extensions: 814
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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