Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k09
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008993-1|AAH08993.1| 275|Homo sapiens chromosome 9 open readi... 42 0.003
AY598327-1|AAT06738.1| 275|Homo sapiens L8 protein. 42 0.003
AL353805-6|CAI12542.1| 275|Homo sapiens chromosome 9 open readi... 42 0.003
AL353805-5|CAI12541.1| 181|Homo sapiens chromosome 9 open readi... 42 0.003
AL353805-4|CAI12540.1| 159|Homo sapiens chromosome 9 open readi... 42 0.003
AL353805-3|CAI12539.1| 134|Homo sapiens chromosome 9 open readi... 42 0.003
M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein. 31 4.9
BC037344-1|AAH37344.1| 931|Homo sapiens RAG1 protein protein. 31 4.9
BC021580-1|AAH21580.1| 172|Homo sapiens C9orf90 protein protein. 31 4.9
AL360268-1|CAH73132.1| 327|Homo sapiens chromosome 9 open readi... 31 4.9
>BC008993-1|AAH08993.1| 275|Homo sapiens chromosome 9 open reading
frame 30 protein.
Length = 275
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>AY598327-1|AAT06738.1| 275|Homo sapiens L8 protein.
Length = 275
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>AL353805-6|CAI12542.1| 275|Homo sapiens chromosome 9 open reading
frame 30 protein.
Length = 275
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>AL353805-5|CAI12541.1| 181|Homo sapiens chromosome 9 open reading
frame 30 protein.
Length = 181
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>AL353805-4|CAI12540.1| 159|Homo sapiens chromosome 9 open reading
frame 30 protein.
Length = 159
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>AL353805-3|CAI12539.1| 134|Homo sapiens chromosome 9 open reading
frame 30 protein.
Length = 134
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 191 LKKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIK 343
LK++ WQ LA+++NS + R QL+ WEN+K +K A+ R +K
Sbjct: 44 LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVK 94
>M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.
Length = 1043
Score = 30.7 bits (66), Expect = 4.9
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = +3
Query: 189 N*KKRLGKTWQMTLIRRSQPSPELQRSFVSNGKT*RSLLANTVPTRETALLRLDVMRIAF 368
N K K WQ TL + + L+ NG R L+ L+ + A
Sbjct: 823 NASKEERKRWQATLDKHLRKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEAL 882
Query: 369 RQ-MEYWTK*LHFWASASHVKVVEVPAQICYYS 464
R+ M+ + K W S+ K E P +C YS
Sbjct: 883 RELMDLYLKMKPVWRSSCPAK--ECPESLCQYS 913
>BC037344-1|AAH37344.1| 931|Homo sapiens RAG1 protein protein.
Length = 931
Score = 30.7 bits (66), Expect = 4.9
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = +3
Query: 189 N*KKRLGKTWQMTLIRRSQPSPELQRSFVSNGKT*RSLLANTVPTRETALLRLDVMRIAF 368
N K K WQ TL + + L+ NG R L+ L+ + A
Sbjct: 823 NASKEERKRWQATLDKHLRKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEAL 882
Query: 369 RQ-MEYWTK*LHFWASASHVKVVEVPAQICYYS 464
R+ M+ + K W S+ K E P +C YS
Sbjct: 883 RELMDLYLKMKPVWRSSCPAK--ECPESLCQYS 913
>BC021580-1|AAH21580.1| 172|Homo sapiens C9orf90 protein protein.
Length = 172
Score = 30.7 bits (66), Expect = 4.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 194 KKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTR 328
K AW + N+ +AT R +++ KW +LK R+ A R
Sbjct: 44 KSAAWHGILRRVNA-VATCRRELPEVKKKWSDLKTEVRRKVAQVR 87
>AL360268-1|CAH73132.1| 327|Homo sapiens chromosome 9 open reading
frame 90 protein.
Length = 327
Score = 30.7 bits (66), Expect = 4.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 194 KKKAWQNLANDFNSSIATVPRTAAQLRLKWENLKKSARKHCANTR 328
K AW + N+ +AT R +++ KW +LK R+ A R
Sbjct: 44 KSAAWHGILRRVNA-VATCRRELPEVKKKWSDLKTEVRRKVAQVR 87
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,379,717
Number of Sequences: 237096
Number of extensions: 1731892
Number of successful extensions: 3488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3488
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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