Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k09
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    29   2.3  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z99279-1|CAB16496.4|  598|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U28944-3|AAN63455.1|  205|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U28944-2|AAL08028.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U28944-1|AAA68368.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 198 FFSSLFMAFVVLLFIISFTATSCSRSF 118
           FF   F++F++L+F++ FT   C  +F
Sbjct: 20  FFVFPFVSFIILMFLVFFTGKKCLSAF 46


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = -3

Query: 306 RADFFKFSHLRRSCAAVRGTVAIDELKSFAKFCQAFFFSSLFMAFVVLLFIISFTATSCS 127
           +A F  F+H  +S   ++   AI  L  F     AFF ++ F+ F++ + +I F   +  
Sbjct: 42  KAIFPVFNHFYKSIKKIQIVNAIYILYFFFTLFMAFFGATFFV-FLIPVLLIVFPLVTGL 100

Query: 126 RSFVSSLVMGAAFVNEFILF 67
              V+  ++G   +  F L+
Sbjct: 101 MHDVNEFLLGLLSIQRFCLY 120


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 254 RTAAQLRLKW-ENLKKSARKHCANTRNGLIKTGRDEDC 364
           + +AQ   +W E L K ARKH  N  N  + TGR   C
Sbjct: 533 KESAQSSAQWPEKLTKLARKHEFNVENCKLTTGRLPRC 570


>AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical
           protein C29F9.11 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 616 CD*NLFFIVFQIKLLFFCFKVLC 548
           C   LFF++F+ KL+FF +  LC
Sbjct: 3   CQEILFFLIFRPKLVFFLYICLC 25


>Z99279-1|CAB16496.4|  598|Caenorhabditis elegans Hypothetical
           protein Y57G11A.1a protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 230 NSSIATVPRTAAQLRLKWENLKKSARKHCANTRNGLIKTGRDEDCFPP 373
           +  +A     A+++  KWE +++   K     +    KTG    C PP
Sbjct: 457 DEDVAIKAEHASKMAAKWEKIQQKEAKKAEKGKMPEKKTGNGRFCLPP 504


>U28944-3|AAN63455.1|  205|Caenorhabditis elegans Hypothetical
           protein C18A3.4c protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 235 RIKVICQVLPSLFFQFIIYGICCLIIYNFIHRHKL*QKL 119
           R+  +  +L  L+F F ++ I CL+++ F   H L  K+
Sbjct: 102 RVWFLSHLLSFLYFSFALWVIICLLLHIFDGHHALVTKM 140


>U28944-2|AAL08028.1|  339|Caenorhabditis elegans Hypothetical
           protein C18A3.4b protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 235 RIKVICQVLPSLFFQFIIYGICCLIIYNFIHRHKL*QKL 119
           R+  +  +L  L+F F ++ I CL+++ F   H L  K+
Sbjct: 102 RVWFLSHLLSFLYFSFALWVIICLLLHIFDGHHALVTKM 140


>U28944-1|AAA68368.1|  342|Caenorhabditis elegans Hypothetical
           protein C18A3.4a protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 235 RIKVICQVLPSLFFQFIIYGICCLIIYNFIHRHKL*QKL 119
           R+  +  +L  L+F F ++ I CL+++ F   H L  K+
Sbjct: 102 RVWFLSHLLSFLYFSFALWVIICLLLHIFDGHHALVTKM 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,280
Number of Sequences: 27780
Number of extensions: 284980
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)