Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k06
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    28   3.0  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   7.0  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   7.0  

>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 215 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHV-SSD 391
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S  
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFSIF 294

Query: 392 SFGVYVKS*SLIL 430
           + G +  S  LIL
Sbjct: 295 AIGGFAFSDDLIL 307


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 360 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 253
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 360 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 253
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,293,160
Number of Sequences: 27780
Number of extensions: 164151
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)