Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k03
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0005 + 30952287-30952762,30952973-30953282                       30   1.8  
04_01_0267 + 3584117-3584922,3585331-3585361                           29   4.1  
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348...    28   7.1  
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    28   7.1  
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     28   9.4  

>03_06_0005 + 30952287-30952762,30952973-30953282
          Length = 261

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 357 EYTNNYYMVDNRVFVVTFDKIRFMISYNLVKETG--IEIPHSQDVCNDETAAQNCKKCHF 184
           E  +   MV +  FV T  K++  + Y+ +  +   I IP+ +     ET A  C    F
Sbjct: 118 EVADKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWKPRFPKETPASFCHHVKF 177

Query: 183 VDVHHTFKAALT 148
               H F+A LT
Sbjct: 178 TSSSHAFRADLT 189


>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 33  LDTFRTTCPKETHTFFRPTIVTK-SQMWFARNTYLN*NMKSEQL*TCDAH 179
           +DT R+T  KE HT     I  K  QM F+   +       E+   C+AH
Sbjct: 161 IDTIRSTLKKEPHTKCHSHIEYKPHQMSFSNEGHFRREANEEEFLICNAH 210


>12_01_0441 +
           3484003-3484374,3485071-3485151,3485242-3485514,
           3485695-3485826,3485903-3486076,3486164-3486393,
           3486562-3486679,3486717-3486743,3486948-3487079,
           3487189-3487323,3487393-3487599,3487772-3487936
          Length = 681

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 728 NHRQLELNGSWTNTWTIHKVWW 663
           N R   +NGSW   W + K+ W
Sbjct: 361 NRRLAAVNGSWLGAWGLEKLLW 382


>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = -2

Query: 276 NLVKETGIEIPHSQDVCNDETAAQNCKKCHFVDVHHTFKAALTSYFNLDMYYAQTTFVTL 97
           NLV + G   PH + V N ET  +  +     DV  +  A L           Q  ++ L
Sbjct: 619 NLVADVGRSFPHQEQVLNGETGGEILRNNAPADVQSSLMAFLEKLEAFSAVSLQ-KYIDL 677

Query: 96  LQSLGERKCGF 64
            +++ E K  F
Sbjct: 678 QKNIDEAKDRF 688


>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 181 DKMAFFTILCSRLVVAHILRMRNFYAGFFNQIVRNHKSNF 300
           D   FF+ LCS    AH+   RN+ AG   ++ R  +S +
Sbjct: 491 DPTGFFSRLCSE---AHLAADRNYLAGVIGEVNRYRRSRW 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,261
Number of Sequences: 37544
Number of extensions: 342541
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)