Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k03
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding p... 30 1.6
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 30 2.1
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 29 4.8
Z75536-1|CAE17805.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.4
U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical p... 28 6.4
U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical pr... 28 6.4
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL031630-21|CAA20997.2| 736|Caenorhabditis elegans Hypothetical... 28 6.4
U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding p... 28 8.4
>U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding
protein protein 2 protein.
Length = 161
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -2
Query: 489 DNDYNSNRFSDHMSETGYYMFVVKKSEVKPFEIIFAKYVSNVVYEYTN 346
D D++ N F ++++ GY F K F+ +FAK + +++Y+N
Sbjct: 31 DLDHSEN-FDEYLTAKGYGWFTRKLVTFATFKKVFAKNANKNLFDYSN 77
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 697 GRILGRFTKCGGPI*QE*IEA*IQEKHNSKLCN 599
GRIL + TKCG P+ +E I A Q K ++K+ N
Sbjct: 189 GRILAQITKCGNPVTKE-ILARCQVKWDTKIKN 220
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 384 AKYVSNVVYEYTNNYYMVDNRVFVVTF 304
AK N+ YEY ++Y+M D+ F+ F
Sbjct: 424 AKTDGNLRYEYDDHYFMTDSEEFIYEF 450
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 384 AKYVSNVVYEYTNNYYMVDNRVFVVTF 304
AK N+ YEY ++Y+M D+ F+ F
Sbjct: 424 AKTDGNLRYEYDDHYFMTDSEEFIYEF 450
>Z75536-1|CAE17805.1| 195|Caenorhabditis elegans Hypothetical
protein F18C12.4 protein.
Length = 195
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 558 VASTQEITHYFTNDFAPYLMRFDDNDY 478
V+++Q+++ F DF P L DNDY
Sbjct: 145 VSTSQKLSETFERDFDPVLEGMSDNDY 171
>U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical
protein F45E4.7b protein.
Length = 505
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 432 CNNQSRTYGRRTC 470
CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504
>U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical
protein F45E4.7c protein.
Length = 784
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 432 CNNQSRTYGRRTC 470
CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 432 CNNQSRTYGRRTC 470
CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867
>AL031630-21|CAA20997.2| 736|Caenorhabditis elegans Hypothetical
protein Y38H6C.20 protein.
Length = 736
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 249 IPHSQDVCNDETAAQNCKKCHFVDV-HHTFKAALTSYFNLDMYYAQTTFVTLLQSLGERK 73
+P S DV K HFVDV T + F+L ++T+ + S+ + K
Sbjct: 92 LPMSHDVIESSRRPPKLKSVHFVDVGQETTAIVMELLFDLLNMKLRSTYELRVGSIYDTK 151
Query: 72 CGFLL 58
C +L
Sbjct: 152 CDRML 156
>U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding
protein protein 1 protein.
Length = 159
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 489 DNDYNSNRFSDHMSETGYYMFVVKKSEVKPFEIIFAKYVSNVVYEYTN 346
D D++ N F ++++ GY F K F+ +F K + +++Y+N
Sbjct: 29 DLDHSEN-FDEYLTAKGYGWFTRKLVTFATFKKVFTKTSNKNLFDYSN 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,065
Number of Sequences: 27780
Number of extensions: 345981
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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