Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28k01
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.7  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        27   2.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.0  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   6.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   8.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -1

Query: 128  AHNFNVDEIKVHQLMNDHP-----NFIKIYFNHGFINNQVIVMDYI 6
            A NFN  EI+  +  N  P     N I  YFNH F N Q++   +I
Sbjct: 2282 ASNFNTLEIEFMKGSNLAPGCQFENIICPYFNHEFSNEQLLQQKFI 2327


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 643 IGTVNDSEITMLIADFYDLYSNYNIEL 723
           +G+VN+SE T++  DFY+   +Y  E+
Sbjct: 390 LGSVNESEYTVVKVDFYNNIKSYLSEV 416


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -1

Query: 260 TLVQFYENCKNVKTRYKIINGRFGKISILSHKPTSKLYLQKTISA--HNFNVDEIKVHQL 87
           +L++ +  C N  +RY        K+S++ H+    L L+  +S    N   ++IK  ++
Sbjct: 656 SLLKLFFKCANEGSRYNASAALSFKLSLMLHEKEEVLLLKTNVSCVLANHGYNDIKFEEM 715

Query: 86  M 84
           +
Sbjct: 716 V 716


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 289 PPPPQMLRCKRWYNFTKTAKTSKLGIK*STGVLAKYLFY 173
           PP   ++    WY+F +      +G+   +G +  Y+FY
Sbjct: 244 PPALFLIFATPWYHFIQLVLPHYIGVAGFSGAILGYVFY 282


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +1

Query: 517 DSEVSRYYNAVVKMKRLVINVRDPSLRQSLYNTIAYIERLLNIGTVNDSEITMLIADFYD 696
           D  +S +   +  +    IN+++ S R  L+N I    +  N  T  ++ I   +  +++
Sbjct: 186 DMFLSLFLKPIYTLMESEINIKNASFRSRLFNIIGLAVQFHNHTTAAETNIIQNL-QYFE 244

Query: 697 LYSNYNIEL 723
             S Y  +L
Sbjct: 245 HLSEYAADL 253


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
 Frame = -1

Query: 200 GRFGKISILSHKPTSKLY----LQKTISAHNFNVDEIK----VHQLMN--DHPNFIKIYF 51
           G FGK+ +  +K   K Y    L+K     N  ++ +K    V ++ N   HP  + ++ 
Sbjct: 673 GNFGKVMLAEYKVNKKFYAIKVLKKEAILKNEELESLKTEKHVFEVANKEKHPFLLNLFA 732

Query: 50  NHGFINNQVIVMDYI 6
           +         VM+YI
Sbjct: 733 SFQTSTRVYFVMEYI 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,999
Number of Sequences: 5004
Number of extensions: 61674
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)