Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28k01
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81140-4|CAJ55247.1| 463|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81140-3|CAJ55246.1| 453|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z95122-2|CAB08355.1| 363|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48230-2|CAA88264.1| 363|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein. 30 1.5
AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinas... 30 1.5
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 25 5.5
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z81140-4|CAJ55247.1| 463|Caenorhabditis elegans Hypothetical
protein W10G6.2b protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = -1
Query: 200 GRFGKISILSHKPTSKLYLQKTIS-AHNFNVDEIK-----VHQLMND--HPNFIKIYFNH 45
G FG++ + HK T K+Y K +S H +E+K + L+N+ HP + ++F+
Sbjct: 144 GSFGRVYQVRHKETKKIYAMKILSKEHIRKKNEVKHVMAERNVLINNFKHPFLVSLHFSF 203
Query: 44 GFINNQVIVMDYID 3
V+D+++
Sbjct: 204 QNKEKLYFVLDHLN 217
>Z81140-3|CAJ55246.1| 453|Caenorhabditis elegans Hypothetical
protein W10G6.2a protein.
Length = 453
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = -1
Query: 200 GRFGKISILSHKPTSKLYLQKTIS-AHNFNVDEIK-----VHQLMND--HPNFIKIYFNH 45
G FG++ + HK T K+Y K +S H +E+K + L+N+ HP + ++F+
Sbjct: 134 GSFGRVYQVRHKETKKIYAMKILSKEHIRKKNEVKHVMAERNVLINNFKHPFLVSLHFSF 193
Query: 44 GFINNQVIVMDYID 3
V+D+++
Sbjct: 194 QNKEKLYFVLDHLN 207
>Z95122-2|CAB08355.1| 363|Caenorhabditis elegans Hypothetical
protein F42G10.2 protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 230 NVKTRYKIINGRFGKISILSHKPTSKLYLQKTISAHNFNVDEIKVHQLMNDHPNFIK 60
N++ I NG FG + + HK T KL K I + N+ + +L+ +H +K
Sbjct: 65 NLQDLGAIGNGNFGTVYKMRHKETGKLIAVKRIRCN--NIGHREQIRLLREHDTIVK 119
>Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical
protein F52F12.3 protein.
Length = 536
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 113 VDEIKVHQLMNDHPNFIKIY-FNHGFINNQVIVMDYID 3
+ E KV + +HPN IKIY N Q +VM+Y+D
Sbjct: 95 IREAKVMWDLRNHPNIIKIYGLYKSPRNGQGVVMEYMD 132
>Z48230-2|CAA88264.1| 363|Caenorhabditis elegans Hypothetical
protein F42G10.2 protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 230 NVKTRYKIINGRFGKISILSHKPTSKLYLQKTISAHNFNVDEIKVHQLMNDHPNFIK 60
N++ I NG FG + + HK T KL K I + N+ + +L+ +H +K
Sbjct: 65 NLQDLGAIGNGNFGTVYKMRHKETGKLIAVKRIRCN--NIGHREQIRLLREHDTIVK 119
>AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein.
Length = 536
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 113 VDEIKVHQLMNDHPNFIKIY-FNHGFINNQVIVMDYID 3
+ E KV + +HPN IKIY N Q +VM+Y+D
Sbjct: 95 IREAKVMWDLRNHPNIIKIYGLYKSPRNGQGVVMEYMD 132
>AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinase
MOM-4 protein.
Length = 536
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 113 VDEIKVHQLMNDHPNFIKIY-FNHGFINNQVIVMDYID 3
+ E KV + +HPN IKIY N Q +VM+Y+D
Sbjct: 95 IREAKVMWDLRNHPNIIKIYGLYKSPRNGQGVVMEYMD 132
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 24.6 bits (51), Expect(2) = 5.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 300 RHGHHHRH 277
RHGHHH H
Sbjct: 412 RHGHHHHH 419
Score = 22.2 bits (45), Expect(2) = 5.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 297 HGHHHRHKC 271
H HHH H C
Sbjct: 415 HHHHHHHGC 423
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 556 MKRLVINVRDPSLRQSLYNTIAYIERLLNI 645
M+RL N DP QS YN + Y R N+
Sbjct: 140 MERLPDNRHDPHQNQSNYNMLQYFSRKYNL 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,440
Number of Sequences: 27780
Number of extensions: 351365
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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