Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j18
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    28   0.21 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   2.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    23   4.5  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    23   4.5  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   4.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   5.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   7.8  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    23   7.8  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  DNYSLHNFYNNNRKPLKPTTXHDGNIK 117
           DNYSL  F N N  P KP+  H   +K
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMK 138


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 244 YTFIYXCXLCYNRDCKTCDRARQAYF 167
           +T+ Y C L + ++ K+C   RQ  +
Sbjct: 102 HTYCYECLLNWLKESKSCPTCRQKLY 127


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 58  FYNNNRK--PLKPTTXHDGNIKKSVYXXITYVRKLM 159
           F N   K  PL+P+  HD   K S Y      R++M
Sbjct: 514 FVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIM 549


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 16  YCLCCTMDNYSLHNFYNNNRKPLKPTTXHDGNIKKSVYXXITYVRKLMCKENMP 177
           +CL CT+    L  FY    K +K T        K+    I +  K    ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 40  NYSLHNFYNNNRKPLKP 90
           NY+  N YN N K  KP
Sbjct: 233 NYTRSNAYNKNNKDQKP 249


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 70   CCCKNCATNNYP*CSTGNITDA 5
            CCC  C +   P    GNI  A
Sbjct: 1103 CCCSKCNSTMSPFWWPGNICQA 1124


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 82  EVCGCCCKNCATNNY 38
           ++ G CC+NC   NY
Sbjct: 155 QIEGWCCQNCDILNY 169


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 16  YCLCCTMDNYSLHNFYNNNRKPLKPTTXHDGNIKKSVYXXITYVRKLMC 162
           +CL CT+    L  FY    K +K T     N +K     I  +  ++C
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTAVGLYNSRKKWVVIIWLLWVVIC 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,187
Number of Sequences: 5004
Number of extensions: 13088
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)