Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28j16
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 195 6e-51
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 112 5e-26
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 109 5e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 108 7e-25
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 29 0.66
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 28 1.2
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 6.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 195 bits (475), Expect = 6e-51
Identities = 82/111 (73%), Positives = 98/111 (88%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVH+QAGQCGNQ+G+ FW I+DEHG+D+ G+Y G S+ Q +R+NVY+NEA+ GKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRAVLVDLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAE 111
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 112 bits (269), Expect = 5e-26
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDR--INVYYNEASSGK 554
MREI+ + GQ G QIG+ WE+ EHG+ G E+ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 555 YVPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
YVPR++ VDLEP +D VR+GPY LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 109 bits (261), Expect = 5e-25
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTG-------VYKGESDLQLDRINVYYNE 539
MRE++ V GQ G QIG+ WE+ EHG+ G V+K S L D +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLN-DGFGTFFSE 59
Query: 540 ASSGKYVPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
GK+VPR++ VDLEP +D VR+GPY LF P+ V G+ A NN+A+GHYT G E
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 108 bits (260), Expect = 7e-25
Identities = 46/106 (43%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +3
Query: 384 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVP 563
REI+ +QAGQCGNQIGS+FW+ + EHG+ G + + +DR +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 564 RAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQS--GAGNNWAKGH 695
RA+L+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 183 ILKVNYLLFSQLANYYFLNLTLKHLLSDRYML*NSY*AFSKSILKI 46
+L ++ L+ Y LNL LKH LS Y+ +Y +FS L I
Sbjct: 1155 LLSIHLLISRNHDPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHI 1200
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 615 GPYGMLFRPDNFVFGQSGAG-NNWA 686
GPYG +F P F+F +G NW+
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +3
Query: 192 KMN*CITELRFLSLHLLSVVHYISVFPRKKAISSDK 299
K+N ++++ ++ H + HY+ ++ R++ I DK
Sbjct: 3 KVNPSLSKVLLVTAHPIPTTHYLCLYCRRRKIKCDK 38
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 199 TSVLRNYDSYRYIYYQWCITY 261
T VLRN S+R +Y W + +
Sbjct: 489 TEVLRNITSFRPLYRDWLVAF 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,665
Number of Sequences: 5004
Number of extensions: 65527
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -