Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28j16
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 224 4e-59
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 223 7e-59
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 222 2e-58
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 221 4e-58
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 221 4e-58
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 221 4e-58
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 159 2e-39
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 159 2e-39
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 112 3e-25
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 110 8e-25
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 110 8e-25
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 110 8e-25
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 109 2e-24
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 109 3e-24
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 109 3e-24
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 109 3e-24
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 109 3e-24
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 109 3e-24
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 108 3e-24
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 108 3e-24
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 107 1e-23
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 101 7e-22
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 99 2e-21
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 92 4e-19
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 92 4e-19
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 77 2e-14
Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82071-3|CAH04734.1| 336|Caenorhabditis elegans Hypothetical pr... 31 1.1
AY204181-1|AAO39185.1| 336|Caenorhabditis elegans nuclear recep... 31 1.1
AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 31 1.1
AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 31 1.1
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 30 1.9
U00052-3|AAK21426.1| 308|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z82278-2|CAB05254.1| 170|Caenorhabditis elegans Hypothetical pr... 28 7.6
U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine rece... 28 7.6
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 224 bits (548), Expect = 4e-59
Identities = 98/111 (88%), Positives = 105/111 (94%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVHVQAGQCGNQIG+KFWE+ISDEHG+ G YKGESDLQL+RINVYYNEA+ GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRAVLVDLEPGTMD+VRSGP+G LFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 223 bits (546), Expect = 7e-59
Identities = 96/111 (86%), Positives = 105/111 (94%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVH+QAGQCGNQIG+KFWE+ISDEHG+D TG Y G+SDLQL+RINVYYNEAS GKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRA LVDLEPGTMD+VR+GP+G LFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 61 PRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 222 bits (543), Expect = 2e-58
Identities = 97/111 (87%), Positives = 106/111 (95%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVHVQAGQCGNQIGSKFWE+ISDEHG+ G +KGESDLQL+RI+VYYNEA++GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRAVLVDLEPGTMD+VRSGP+G LFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 221 bits (540), Expect = 4e-58
Identities = 96/111 (86%), Positives = 106/111 (95%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVHVQAGQCGNQIGSKFWE+ISDEHG+ G +KGE+DLQL+RI+VYYNEA++GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRAVLVDLEPGTMD+VRSGP+G LFRPDNFVFGQSGAGNNWAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 111
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 221 bits (540), Expect = 4e-58
Identities = 96/111 (86%), Positives = 105/111 (94%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVH+QAGQCGNQIGSKFWE+ISDEHG+D +G Y G+SDLQL+RINVYYNEA S KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRAVLVDLEPGTMD+VRSGP+G LFRPDN+VFGQSGAGNNWAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAE 111
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 221 bits (540), Expect = 4e-58
Identities = 96/111 (86%), Positives = 105/111 (94%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MREIVH+QAGQCGNQIGSKFWE+ISDEHG+D +G Y G+SDLQL+RINVYYNEA S KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRAVLVDLEPGTMD+VRSGP+G LFRPDN+VFGQSGAGNNWAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAE 111
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 159 bits (386), Expect = 2e-39
Identities = 68/111 (61%), Positives = 88/111 (79%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
M+EI++VQ GQCGNQIG+KFWE IS+EHG+ T G YKG++ QL+RI YY E KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRA+LVDL+P +++ VRS YG LF P+N V G+SGAGNNW++G+Y +GAE
Sbjct: 61 PRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAE 111
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 159 bits (386), Expect = 2e-39
Identities = 68/111 (61%), Positives = 88/111 (79%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
M+EI++VQ GQCGNQIG+KFWE IS+EHG+ T G YKG++ QL+RI YY E KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRA+LVDL+P +++ VRS YG LF P+N V G+SGAGNNW++G+Y +GAE
Sbjct: 61 PRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAE 111
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 112 bits (269), Expect = 3e-25
Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = +3
Query: 384 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGES-DLQLDRINVYYNEASSGKYV 560
RE V + GQ G QIG+ WE+ EHG+D G K E + + + +++E+ +GK+V
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHV 65
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PRA+ VDLEP +D +R+G YG LF PD + G+ A NN+A+GHYT G E
Sbjct: 66 PRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKE 116
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 110 bits (265), Expect = 8e-25
Identities = 45/111 (40%), Positives = 69/111 (62%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G +S + + ++++ SG+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKE 111
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 110 bits (265), Expect = 8e-25
Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLD--RINVYYNEASSGK 554
MREIV + GQ G QIG+ WE+ EHG+ G+ ++ ++ N +++E SGK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 555 YVPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
+VPRA+ VDLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKE 113
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 110 bits (265), Expect = 8e-25
Identities = 45/111 (40%), Positives = 69/111 (62%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G +S + + ++++ SG+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKE 111
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 109 bits (262), Expect = 2e-24
Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Frame = +3
Query: 384 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLD--RINVYYNEASSGKY 557
RE++ + GQ G Q+G+ WE+ EHG+ G+ E L +D N +++E +GK+
Sbjct: 7 REVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAGKH 66
Query: 558 VPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
VPRA++VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 67 VPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKE 118
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 109 bits (261), Expect = 3e-24
Identities = 43/111 (38%), Positives = 67/111 (60%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G + + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKE 111
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 109 bits (261), Expect = 3e-24
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGK 554
MRE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 555 YVPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
+VPRAV+VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKE 113
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 109 bits (261), Expect = 3e-24
Identities = 43/111 (38%), Positives = 67/111 (60%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G + + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKE 111
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 109 bits (261), Expect = 3e-24
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGK 554
MRE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 555 YVPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
+VPRAV+VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKE 113
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 109 bits (261), Expect = 3e-24
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGK 554
MRE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 555 YVPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
+VPRAV+VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKE 113
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 108 bits (260), Expect = 3e-24
Identities = 44/111 (39%), Positives = 67/111 (60%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G E + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 PRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKE 111
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 108 bits (260), Expect = 3e-24
Identities = 44/111 (39%), Positives = 67/111 (60%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G E + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 PRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKE 111
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 107 bits (256), Expect = 1e-23
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +3
Query: 384 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGKY 557
RE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG++
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 558 VPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
VPRAV+VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKE 112
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 101 bits (241), Expect = 7e-22
Identities = 44/111 (39%), Positives = 67/111 (60%)
Frame = +3
Query: 381 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 560
MRE++ + GQ G QIG+ WE+ EHG+ G E D + ++++ G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSM-EPDGNSGSLGTFFSDTGYGRHV 59
Query: 561 PRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
PR++ VDLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 60 PRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKE 110
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 99 bits (238), Expect = 2e-21
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = +3
Query: 384 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGES--DLQLDRINVYYNEASSGKY 557
RE++ + GQ G QIG+ WE+ EHG+ G + + D + + IN ++ E + GK+
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 558 VPRAVLVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAE 713
VPR + VDLEP +D VR+G Y LF P+ + G+ A N +A+G YT G E
Sbjct: 68 VPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGRE 119
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 91.9 bits (218), Expect = 4e-19
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Frame = +3
Query: 390 IVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVPRA 569
++ V GQCGNQ+ FW+ + DEHG++ G E D+ D+ ++ + +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMN-DKKDLLFYQADDDHYVPRA 65
Query: 570 VLVDLEPGTMDAVRSGP-YGMLFRPDNFVFGQ--SGAGNNWAKGHYTEGAE 713
VLVDLEP ++ + P + LF DN GAGNNWA G Y +G E
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQE 115
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 91.9 bits (218), Expect = 4e-19
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Frame = +3
Query: 390 IVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVPRA 569
++ V GQCGNQ+ FW+ + DEHG++ G E D+ D+ ++ + +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMN-DKKDLLFYQADDDHYVPRA 65
Query: 570 VLVDLEPGTMDAVRSGP-YGMLFRPDNFVFGQ--SGAGNNWAKGHYTEGAE 713
VLVDLEP ++ + P + LF DN GAGNNWA G Y +G E
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQE 115
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +3
Query: 459 EHGVDTTGVYKGES--DLQLDRINVYYNEASSGKYVPRAVLVDLEPGTMDAVRSGPYGML 632
EHG+ G + + D + + IN ++ E + GK+VPR + VDLEP +D VR+G Y L
Sbjct: 5 EHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGTYRSL 64
Query: 633 FRPDNFVFGQSGAGNNWAKGHYTEGAE 713
F P+ + G+ A N +A+G YT G E
Sbjct: 65 FHPEQLLSGKEDAANCYARGRYTIGRE 91
>Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 575 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 480
E TG I+T RC I N + L+ A+ F NS
Sbjct: 239 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 270
>Z82071-3|CAH04734.1| 336|Caenorhabditis elegans Hypothetical
protein W05B5.3b protein.
Length = 336
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 575 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 480
E TG I+T RC I N + L+ A+ F NS
Sbjct: 61 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 92
>AY204181-1|AAO39185.1| 336|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 336
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 575 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 480
E TG I+T RC I N + L+ A+ F NS
Sbjct: 61 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 92
>AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 575 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 480
E TG I+T RC I N + L+ A+ F NS
Sbjct: 239 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 270
>AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 575 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 480
E TG I+T RC I N + L+ A+ F NS
Sbjct: 239 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 270
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 9 NLYDVLSDHNKCISSILIY*MLNNYFTTYNDQIKGVLMSN*ENNNLQAEKITNNLP 176
+LY V + N+C S+ I+ LNN + I MS +N N + T LP
Sbjct: 309 SLYSVANQANQCFHSLTIFVHLNNQNCQFKKLIADTWMSTLKNMN-DSSLATRGLP 363
>U00052-3|AAK21426.1| 308|Caenorhabditis elegans Hypothetical
protein K02F3.4 protein.
Length = 308
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -3
Query: 520 ILSSCRSLSPL*TPVVSTPCSSEIISQNFDPI*FPHWPACTWTISRISNTIFTHAFT 350
IL+SCR+L T V P +I S P+ F H P C + T +T T
Sbjct: 42 ILNSCRNLPDCLTTTV--PQLHQINSAEQSPLQFTHQPNCDLIVVLDEQTTYTTTMT 96
>Z82278-2|CAB05254.1| 170|Caenorhabditis elegans Hypothetical
protein M162.2 protein.
Length = 170
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 407 GLHVDYFTHF*HNIHTRL--HNLTGNKVNNSKSDDVINFIGTYR 282
GL V Y T+F N+ N+T K N D+V NF+ +YR
Sbjct: 106 GLSVSY-TNFGSNVAQNYFSENITNTKWNTLGDDEVHNFVCSYR 148
>U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein76, isoform b protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -1
Query: 285 SPFFLETLICNAPLIVNVTIRIVIP*YTSSFSFVILKVNYLLFSQLANYY 136
S F T+ + + I++++P ++F++ V+Y +S +NYY
Sbjct: 246 SSFSKRTIELQKKFFIGILIQVLVP-----YAFIVPSVSYCCYSVYSNYY 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,483
Number of Sequences: 27780
Number of extensions: 376371
Number of successful extensions: 908
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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