Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j16
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.0  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.8  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 669 RRSDRRQSYRAGTAF 625
           RR DRR++ RA TAF
Sbjct: 1   RRWDRREARRARTAF 15


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 203 VYYGITILIVTF 238
           +YYG++I +VTF
Sbjct: 277 LYYGVSICLVTF 288


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 60 SILKICIYCDPKVH 19
          S+L  C+ C P VH
Sbjct: 8  SLLITCLICSPSVH 21


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 572  SRGSGAGHNGRGQIRT 619
            SR +G+GH G G + T
Sbjct: 1924 SRQTGSGHGGHGGLLT 1939


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/57 (22%), Positives = 21/57 (36%)
 Frame = +2

Query: 362 CEYCVRNA*NSPRASRPMRESDRIEVLGDNLRRAWRRHDRSLQRGERPAARQNKRLL 532
           C+   +   N P   RP+   ++  V     +R W R     Q   +    + K LL
Sbjct: 12  CDLLKKRNENDPFLKRPITGDEKWVVNNIKRKRWWSRPREPAQTTSKAGIHRKKVLL 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,030
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)