Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28j13
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553...    25   6.4  
03_01_0206 - 1625020-1625619,1625722-1625931,1626054-1626094,162...    25   8.5  
02_02_0457 + 10503801-10507358                                         25   8.5  
01_05_0048 - 17561963-17563585                                         25   8.5  

>12_02_0900 -
           24153734-24153943,24154461-24155110,24155198-24155334,
           24156595-24157223
          Length = 541

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 91  PNTKNLFIGLKIP 53
           PN KNLFIG+ +P
Sbjct: 248 PNMKNLFIGILVP 260


>03_01_0206 -
           1625020-1625619,1625722-1625931,1626054-1626094,
           1626185-1626234,1626345-1626433,1626534-1626608,
           1626721-1626806,1626896-1626956,1627090-1627206,
           1627308-1627549,1627983-1628040,1628162-1628284
          Length = 583

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 81  FVFGISLFHA*YYVIASALNRYTSAK 158
           F+F +++FH  Y VI  AL R    K
Sbjct: 158 FIFVLAVFHVTYCVITMALGRLKMKK 183


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = -3

Query: 212 VPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVP 39
           +P   +  QYF+      F  ++      ++++  + +  SKH+ F+   KD    VP
Sbjct: 513 IPILDIGCQYFEELVNRSFFQKVHGNYVIHDLLHDMAQLVSKHECFILKDKDDFEKVP 570


>01_05_0048 - 17561963-17563585
          Length = 540

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 194 AQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF 75
           A +YF L  E+GF   +P    CN +I +  +    H  F
Sbjct: 348 ALKYFQLSKESGFPMEVP---TCNAVIGAYCRALEFHHAF 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,866,404
Number of Sequences: 37544
Number of extensions: 93330
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)