Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28j09
(270 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 77 1e-13
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 72 2e-12
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 64 6e-10
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 64 8e-10
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso... 62 2e-09
UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome sh... 62 3e-09
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 60 1e-08
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 60 1e-08
UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1; N... 59 2e-08
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 58 5e-08
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 55 3e-07
UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-06
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 42 0.003
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha... 40 0.008
UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529... 37 0.10
UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19; Archa... 37 0.10
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;... 35 0.41
UniRef50_Q01CG8 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 0.71
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote... 33 0.94
UniRef50_Q8IL35 Cluster: Putative uncharacterized protein; n=1; ... 33 1.6
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum... 32 2.2
UniRef50_O94143 Cluster: Putative uncharacterized protein BUD19;... 32 2.9
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 76.6 bits (180), Expect = 1e-13
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKL 204
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAK TKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 72.1 bits (169), Expect = 2e-12
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+K TKL L
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 64.1 bits (149), Expect = 6e-10
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = +1
Query: 70 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
+T +K+ L KK+KQNRPIP W R++TGN IRYNAK TKLK+
Sbjct: 33 RTLTLKKHLGKKMKQNRPIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 63.7 bits (148), Expect = 8e-10
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +1
Query: 55 KMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
KM AHK+ +K++L K KQNRP+P W R RT NTIRYN+K TKL +
Sbjct: 79 KMGAHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
60S ribosomal protein L39 - Macaca mulatta
Length = 102
Score = 62.1 bits (144), Expect = 2e-09
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAK 177
MS+ KTF IK+ LA+K KQNRPIPQW++M+TG+ IRYN+K
Sbjct: 1 MSSLKTFKIKQFLAQKQKQNRPIPQWIQMKTGDKIRYNSK 40
>UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome
shotgun sequence; n=6; Fungi/Metazoa group|Rep:
Chromosome 1 SCAF14998, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 503
Score = 61.7 bits (143), Expect = 3e-09
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +1
Query: 61 SAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTI 162
S+HKTF IKR LAKK KQNRPIPQW+RM+TGN I
Sbjct: 429 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKI 462
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 59.7 bits (138), Expect = 1e-08
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +1
Query: 64 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
AHK+ +K++L K KQNRP+P W R RT NTIRYN+K TKL +
Sbjct: 44 AHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 59.7 bits (138), Expect = 1e-08
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +1
Query: 64 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
AHK+ +K++L K KQNRP+P W R RT NTIRYN+K TKL +
Sbjct: 88 AHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1;
Neosartorya fischeri NRRL 181|Rep: Ribosomal protein
L39, putative - Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / NRRL 181)(Aspergillus fischerianus (strain
ATCC 1020 / DSM 3700 / NRRL 181))
Length = 69
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 64 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 165
+HK+F K+KLAK +QNRPIPQW+R+RTGNTIR
Sbjct: 36 SHKSFRTKQKLAKAQRQNRPIPQWIRLRTGNTIR 69
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 57.6 bits (133), Expect = 5e-08
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +1
Query: 55 KMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
+M A+KT +K++ +K+KQNRP+P W R ++ IRYN+K TKLK+
Sbjct: 69 EMGANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 55.2 bits (127), Expect = 3e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +1
Query: 64 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
A+KT +K++ +K+KQNRP+P W R ++ IRYN+K TKLK+
Sbjct: 40 ANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 50.4 bits (115), Expect = 8e-06
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +3
Query: 42 NLIVQNVGP*DVYY*AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKDKAQVVS 215
N ++VGP D A+ QKAE KQTHS+V ++AH KHY + R SLE +A+ VS
Sbjct: 95 NTFDRDVGPQDFPDQAEACQKAEAKQTHSTVDQNAHWKHYPLQRQAPSLETYEAEAVS 152
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 41.9 bits (94), Expect = 0.003
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
MS HK+ K +L K LK+N PIP WV ++T IR+N LK+
Sbjct: 1 MSKHKSLGKKLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
- Encephalitozoon cuniculi
Length = 52
Score = 40.3 bits (90), Expect = 0.008
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
M + KT ++K +L + LK+NR IP W RM + YN KLK+
Sbjct: 1 MGSRKTALVKTRLMRALKRNREIPAWKRMMKEHKGEYNRARRHWRSKKLKI 51
>UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH0529 - Pyrococcus horikoshii
Length = 174
Score = 36.7 bits (81), Expect = 0.10
Identities = 25/66 (37%), Positives = 33/66 (50%)
Frame = -2
Query: 254 YRVFIRLHLTHSQAYNLSFVLLQXRLLALYRIVFPVRILTH*GMGLFCFSFLANLRLIIN 75
Y +F L HS ++LSFVLLQ L + + V +T G LFCF LA+L
Sbjct: 104 YNLFSGLDHPHSP-HSLSFVLLQCLLFGCVKTLLFVLTITQTGTLLFCFMALASLSFFAR 162
Query: 74 VLWADI 57
L+ I
Sbjct: 163 GLFLAI 168
>UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanococcus
jannaschii
Length = 51
Score = 36.7 bits (81), Expect = 0.10
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLK 207
M ++K K +LAK LKQNR +P +V ++T +R++ K KLK
Sbjct: 1 MGSNKPLGKKVRLAKALKQNRRVPLFVIVKTRGRVRFHPKMRYWRRKKLK 50
>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L39E - Ignicoccus hospitalis KIN4/I
Length = 55
Score = 34.7 bits (76), Expect = 0.41
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 64 AHKTFIIKR-KLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLK 207
AH + K+ +L KK KQNR +P WV ++T + N K+K
Sbjct: 5 AHYKHVAKKIRLGKKTKQNRALPAWVILKTRRRVTRNPMRRYWRRQKIK 53
>UniRef50_Q01CG8 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 138
Score = 33.9 bits (74), Expect = 0.71
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 161 IVFPVRILTH*GMGLFCFSFLANLRLIINVL 69
+V PVR+ H G G FCF F + LI+ VL
Sbjct: 1 MVLPVRMRIHWGSGRFCFCFFPRIFLILKVL 31
>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
symbiosum
Length = 52
Score = 33.5 bits (73), Expect = 0.94
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 58 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKXXXXXXTKLKL 210
M + K K +L KK KQ P+P W+ ++T +R N K T +++
Sbjct: 1 MGSRKPSGRKIRLQKKTKQAAPVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51
>UniRef50_Q8IL35 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1898
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 116 FCFSFLANLRLIINVLWADILNNQVVKTKXNNEHI 12
FC+ F L+ N L+ DILNN++ K N+EH+
Sbjct: 1353 FCYFFQC---LVENELFTDILNNEISNDKDNHEHM 1384
>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
Halorubrum lacusprofundi ATCC 49239
Length = 64
Score = 32.3 bits (70), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 85 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAK 177
K++LAK +QN +P WV M+T + N K
Sbjct: 23 KKRLAKAERQNTRVPAWVMMKTDMNVTRNPK 53
>UniRef50_O94143 Cluster: Putative uncharacterized protein BUD19;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein BUD19 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 102
Score = 31.9 bits (69), Expect = 2.9
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 213 LQLELCPSPXTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM 67
L + L SP + LSV+++SV + PL SVL F L+++RL+
Sbjct: 13 LDVHLGSSPVSSLSVVTDSVVGSQSDPLWQWSVLLLSLSHFLLDSERLL 61
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,868,964
Number of Sequences: 1657284
Number of extensions: 3605012
Number of successful extensions: 7862
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7862
length of database: 575,637,011
effective HSP length: 67
effective length of database: 464,598,983
effective search space used: 10221177626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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